Non-Coding RNA Search

Ss1.1-Pig3-SRG8001D23.3

Sequence:


               
               GAGTGTTTATTCACCAGTAGGAGGCTGGACTAGATGAACTCTATTATTTCTTTCCAAATC
TAATGCTGCATGAAAATTATGCTTTCTCTGCTTTTTTATTTTACGTATACTAACATGAAC
CCTCTCCCTTCTCAGCGCCAGTTTAAGATTACTCTTTGTAGTTCTCATTTCAGTAAAAAA
AAATCAAACTCTCCCCAAACAAAAAAGAACCAAAAAAGTCACCCTATCAGTTTTTAAATG
GATGTGTCGCTGGTCTTTTCTGAAATTTCCCTTGCCCACGTTTACATGGGAAAAGTAAGA
TTAACTCTCTCACGGTGGTCACCCATGCAAGAATCATGTCTTGACATAAATACTAGCTCG
TAAAGGCAAGCAGTTGTGAGGCGCAGGGGGCAGCAGCAAGTCACATATCTCTACTCTTTG
ACCAAAAGGAAAAGAAAATAAAGAAGAACTCTGGAGTGGTCTAAGACTGATAATAGCAAA
GTACATCAAGCACAGAGAAACATATTACTGTGAACTTTTGCTGTTTGAAAATCTTAGGCA
TTCTTAAGTACTAGTTAGACCAACTGTTTTTTTTCCAACCCAAGACTTGTAACACATATA
GACAGCAGGAATTCTTATTTCTATAATAAAGTAACAAGATTCACCTAACTTGTGAAAATA
AAGTAGTACTGAAGATTTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTGTTTATTCACCAGTAGGAGGCTGGACTAGATGAACTCTATTATTTCTTTCCAAATC
TAATGCTGCATGAAAATTATGCTTTCTCTGCTTTTTTATTTTACGTATACTAACATGAAC
CCTCTCCCTTCTCAGCGCCAGTTTAAGATTACTCTTTGTAGTTCTCATTTCAGTAAAAAA
AAATCAAACTCTCCCCAAACAAAAAAGAACCAAAAAAGTCACCCTATCAGTTTTTAAATG
GATGTGTCGCTGGTCTTTTCTGAAATTTCCCTTGCCCACGTTTACATGGGAAAAGTAAGA
TTAACTCTCTCACGGTGGTCACCCATGCAAGAATCATGTCTTGACATAAATACTAGCTCG
TAAAGGCAAGCAGTTGTGAGGCGCAGGGGGCAGCAGCAAGTCACATATCTCTACTCTTTG
ACCAAAAGGAAAAGAAAATAAAGAAGAACTCTGGAGTGGTCTAAGACTGATAATAGCAAA
GTACATCAAGCACAGAGAAACATATTACTGTGAACTTTTGCTGTTTGAAAATCTTAGGCA
TTCTTAAGTACTAGTTAGACCAACTGTTTTTTTTCCAACCCAAGACTTGTAACACATATA
GACAGCAGGAATTCTTATTTCTATAATAAAGTAACAAGATTCACCTAACTTGTGAAAATA
AAGTAGTACTGAAGATTTAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               450-561, - strand, RNAz p=0.925222

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               450-561, - strand, RNAz p=0.925222

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               107-679, gnl|bosTau2|chr2 (72035287-72034704)
               

               
               107-679, gnl|Hg17|chr2 (233457263-233456679)
               

               
               107-679, gnl|Mm7|chr1 (87285934-87285407)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               107-679, gnl|bosTau2|chr2 (72035287-72034704)
               

               
               107-679, gnl|Hg17|chr2 (233457263-233456679)
               

               
               107-679, gnl|Mm7|chr1 (87285934-87285407)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbe (0.478469)
               

               
               nje (0.16592)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               nje (0.16592)
               

               
               jca (0.11396)

	107-679, gnl\|bosTau2\|chr2 (72035287-72034704)
	107-679, gnl\|Hg17\|chr2 (233457263-233456679)
	107-679, gnl\|Mm7\|chr1 (87285934-87285407)