Ss1.1-Pig3-SRG8001E17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCCTCACCGCCGCCACCATGTCCTCCTTCTCCGAGTCTGCGTTAGAGAAGAAGCTCTC GGAGCTGAGCAACTCTCAGCAGAGCGTGCAGACCCTCTCCCTGTGGCTCATCCACCACCG CAAGCACGCAGGACCCATCGTCTCAGTGTGGCACCGTGAGCTCCGCAAAGCCAAATCAAA TAGAAAGCTTACTTTTCTGTACTTAGCCAACGATGTCATCCAGAACAGTAAAAGGAAAGG ACCTGAATTCACTAGAGAATTTGAATCTGTCCTTGTGGATGCTTTTTCTCATGTTGCCAG AGAGGCAGATGAAGGCTGTAAAAAACCTTTAGAAAGATTGCTGAACATCTGGCAAGAAAG AAGTGTGTATGGCGGCGAGTTCATACAGCAGCTGAAGCTGTCTATGGAGGACTCCAAGAG CCCTCCCCCCAAAGCAACGGAGGAGAAGAAATCTCTGAAGCGAACTTTTCAGCAGATACA AGAGGAAGAGGATGACGACTATCCTGGAAGCTACTCTCCCCAAGATCCTTCTGCAGGACC CCTCTTGACCGAAGAACTAATCAAGGCTTTGCAGGACCTGGAAAATGCTGCATCAGGGGA TGCTACTGTCCGACAGAAAATTGCTTCTTTACCCCAGGAAGTACAAGACGTTTCTCTTTT GGAAAAAATAACAGACAAAGAGGCAGCTGAACGTCTTTCAAAAACAGTAGATGAAGCGTG TCTGTTACTAGCTGAATATAACGGGCGCCTGGCGGCAGAACTGGAAGACCGACGCCAGCT GGCTCGGATGTTGGTGGAATACACCCAGAACCAGAAAGATGTTTTGTCAGAAAAGGAGAA AAAACTAGAAGAGTATAAACAGAAGCTTGCTCGGGTAACCCAGGTCCGCAAGGAGCTGAA GTCCCATATTCAGAGTTTGCCAGACCTCTCCTTGCTGCCCAACGTCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCCTCACCGCCGCCACCATGTCCTCCTTCTCCGAGTCTGCGTTAGAGAAGAAGCTCTC GGAGCTGAGCAACTCTCAGCAGAGCGTGCAGACCCTCTCCCTGTGGCTCATCCACCACCG CAAGCACGCAGGACCCATCGTCTCAGTGTGGCACCGTGAGCTCCGCAAAGCCAAATCAAA TAGAAAGCTTACTTTTCTGTACTTAGCCAACGATGTCATCCAGAACAGTAAAAGGAAAGG ACCTGAATTCACTAGAGAATTTGAATCTGTCCTTGTGGATGCTTTTTCTCATGTTGCCAG AGAGGCAGATGAAGGCTGTAAAAAACCTTTAGAAAGATTGCTGAACATCTGGCAAGAAAG AAGTGTGTATGGCGGCGAGTTCATACAGCAGCTGAAGCTGTCTATGGAGGACTCCAAGAG CCCTCCCCCCAAAGCAACGGAGGAGAAGAAATCTCTGAAGCGAACTTTTCAGCAGATACA AGAGGAAGAGGATGACGACTATCCTGGAAGCTACTCTCCCCAAGATCCTTCTGCAGGACC CCTCTTGACCGAAGAACTAATCAAGGCTTTGCAGGACCTGGAAAATGCTGCATCAGGGGA TGCTACTGTCCGACAGAAAATTGCTTCTTTACCCCAGGAAGTACAAGACGTTTCTCTTTT GGAAAAAATAACAGACAAAGAGGCAGCTGAACGTCTTTCAAAAACAGTAGATGAAGCGTG TCTGTTACTAGCTGAATATAACGGGCGCCTGGCGGCAGAACTGGAAGACCGACGCCAGCT GGCTCGGATGTTGGTGGAATACACCCAGAACCAGAAAGATGTTTTGTCAGAAAAGGAGAA AAAACTAGAAGAGTATAAACAGAAGCTTGCTCGGGTAACCCAGGTCCGCAAGGAGCTGAA GTCCCATATTCAGAGTTTGCCAGACCTCTCCTTGCTGCCCAACGTCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 735-854, - strand, RNAz p=0.53988 | |
| 745-862, + strand, RNAz p=0.964654 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 735-854, - strand, RNAz p=0.53988 | |
| 745-862, + strand, RNAz p=0.964654 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-175, gnl|bosTau2|chr13 (48694722-48694548) | |
| 1-175, gnl|Hg17|chr20 (36095745-36095919) | |
| 1-175, gnl|Mm7|chr2 (157769772-157769940) | |
| 287-434, gnl|bosTau2|chr13 (48681653-48681506) | |
| 287-434, gnl|canFam2|chr24 (29536603-29536788) | |
| 287-434, gnl|danRer3|chrUn (67836626-67836469) | |
| 287-434, gnl|dasNov1|scaffold_1808 (116398-116583) | |
| 287-434, gnl|echTel1|scaffold_290665 (64114-64299) | |
| 287-434, gnl|fr1|chrUn (192803903-192804084) | |
| 287-434, gnl|galGal2|chr20 (9942426-9942243) | |
| 287-434, gnl|hg17|chr20 (36110126-36110311) | |
| 287-434, gnl|Hg17|chr20 (36110150-36110297) | |
| 287-434, gnl|loxAfr1|scaffold_18903 (26849-26664) | |
| 287-434, gnl|mm7|chr2 (157784256-157784442) | |
| 287-434, gnl|Mm7|chr2 (157784281-157784429) | |
| 287-434, gnl|monDom2|scaffold_6 (1459155-1458974) | |
| 287-434, gnl|panTro1|chr21 (38483816-38484001) | |
| 287-434, gnl|rheMac2|chr10 (26412776-26412591) | |
| 287-434, gnl|rn3|chr3 (148657782-148657972) | |
| 287-434, gnl|tetNig1|chr9 (1194858-1194727) | |
| 287-434, gnl|xenTro1|scaffold_637 (383380-383534) | |
| 673-862, gnl|bosTau2|chr13 (48664970-48664781) | |
| 673-862, gnl|canFam2|chr24 (29553450-29553646) | |
| 673-862, gnl|danRer3|chrUn (67830056-67829866) | |
| 673-862, gnl|dasNov1|scaffold_221010 (4163-3967) | |
| 673-862, gnl|echTel1|scaffold_103520 (8215-8020) | |
| 673-862, gnl|fr1|chrUn (192805010-192805197) | |
| 673-862, gnl|galGal2|chr20 (9934691-9934493) | |
| 673-862, gnl|hg17|chr20 (36127885-36128083) | |
| 673-862, gnl|Hg17|chr20 (36127895-36128084) | |
| 673-862, gnl|loxAfr1|scaffold_18903 (3165-2969) | |
| 673-862, gnl|mm7|chr2 (157799530-157799726) | |
| 673-862, gnl|Mm7|chr2 (157799540-157799729) | |
| 673-862, gnl|monDom2|scaffold_6 (1433445-1433249) | |
| 673-862, gnl|oryCun1|scaffold_110689 (15441-15637) | |
| 673-862, gnl|panTro1|chr21 (38501671-38501867) | |
| 673-862, gnl|rheMac2|chr10 (26395012-26394816) | |
| 673-862, gnl|rn3|chr3 (148669474-148669670) | |
| 673-862, gnl|tetNig1|chr9 (1194102-1193911) | |
| 673-862, gnl|xenTro1|scaffold_637 (390516-390712) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-175, gnl|bosTau2|chr13 (48694722-48694548) | |
| 1-175, gnl|Hg17|chr20 (36095745-36095919) | |
| 1-175, gnl|Mm7|chr2 (157769772-157769940) | |
| 287-434, gnl|bosTau2|chr13 (48681653-48681506) | |
| 287-434, gnl|canFam2|chr24 (29536603-29536788) | |
| 287-434, gnl|danRer3|chrUn (67836626-67836469) | |
| 287-434, gnl|dasNov1|scaffold_1808 (116398-116583) | |
| 287-434, gnl|echTel1|scaffold_290665 (64114-64299) | |
| 287-434, gnl|fr1|chrUn (192803903-192804084) | |
| 287-434, gnl|galGal2|chr20 (9942426-9942243) | |
| 287-434, gnl|hg17|chr20 (36110126-36110311) | |
| 287-434, gnl|Hg17|chr20 (36110150-36110297) | |
| 287-434, gnl|loxAfr1|scaffold_18903 (26849-26664) | |
| 287-434, gnl|mm7|chr2 (157784256-157784442) | |
| 287-434, gnl|Mm7|chr2 (157784281-157784429) | |
| 287-434, gnl|monDom2|scaffold_6 (1459155-1458974) | |
| 287-434, gnl|panTro1|chr21 (38483816-38484001) | |
| 287-434, gnl|rheMac2|chr10 (26412776-26412591) | |
| 287-434, gnl|rn3|chr3 (148657782-148657972) | |
| 287-434, gnl|tetNig1|chr9 (1194858-1194727) | |
| 287-434, gnl|xenTro1|scaffold_637 (383380-383534) | |
| 673-862, gnl|bosTau2|chr13 (48664970-48664781) | |
| 673-862, gnl|canFam2|chr24 (29553450-29553646) | |
| 673-862, gnl|danRer3|chrUn (67830056-67829866) | |
| 673-862, gnl|dasNov1|scaffold_221010 (4163-3967) | |
| 673-862, gnl|echTel1|scaffold_103520 (8215-8020) | |
| 673-862, gnl|fr1|chrUn (192805010-192805197) | |
| 673-862, gnl|galGal2|chr20 (9934691-9934493) | |
| 673-862, gnl|hg17|chr20 (36127885-36128083) | |
| 673-862, gnl|Hg17|chr20 (36127895-36128084) | |
| 673-862, gnl|loxAfr1|scaffold_18903 (3165-2969) | |
| 673-862, gnl|mm7|chr2 (157799530-157799726) | |
| 673-862, gnl|Mm7|chr2 (157799540-157799729) | |
| 673-862, gnl|monDom2|scaffold_6 (1433445-1433249) | |
| 673-862, gnl|oryCun1|scaffold_110689 (15441-15637) | |
| 673-862, gnl|panTro1|chr21 (38501671-38501867) | |
| 673-862, gnl|rheMac2|chr10 (26395012-26394816) | |
| 673-862, gnl|rn3|chr3 (148669474-148669670) | |
| 673-862, gnl|tetNig1|chr9 (1194102-1193911) | |
| 673-862, gnl|xenTro1|scaffold_637 (390516-390712) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| ton (0.1755) | |
| che (0.136314) |