Ss1.1-Pig3-SRG8001F06.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GAGCGCGTCACCTTGGCGGGCTTTTAAGGGCGTTCTGCAGCGACCCAGCTATAAGTTTTT CTTCAAGTCTATGGACGACGATTTCGGAGTGGTGAAGGAGGAGATCTCGGATGACAATGC CAAGCTGCCCTGCTTCAATGGCCGGGTGGTGTCCTGGCTGGTGTCAGCTGAGGGCTCACA CCCAGAGCCAGCTCCCTTCTGTGCTGACAACCCATCGGAACTGCCACCGCCCATGGAGCG CACAGGAGGCATTGGGGACTCCCGGCCCCCATCCTTCCACCCTCATGCTGGTGGGGGCAG CCAGGAGAACCTGGACAATGACACAGAGACAGACTCCTTGGTGTCTGCTCAGCGAGAGCG GCCACGCCGGAGAGATGGCCCAGAGCACACAACCCGGCTAAATGGAACTGCAAAGGGGGA ACGGCGGCGAGAGCCAGGGGGTTATGATAGCTCATCCACTCTCATGAGCAGCGAGTTGGA GACCACCAGCTTCTTTGATTCAGATGAGGATGACTCCACCAGCAGGTTCAGCAGCTCCAC ATAGCATAGCAGCGCTTCGCGCCTGAGGAGAAGACACAAGCGGCGGCGGCGGAAGCAGAA GGTTTCGCGGATTGAGCGGTCCTCCTCCTTCATCAGCATCACGGACTCCACCATGTCACT CAACATCATCACGGTCACTCTCAACATGGAAAAGTACAACTTCTTGGGCATCTCTATTGT GGGCCAAAGCAACGAGCGTGGTGATGGAGGCATCTACATTGGCTCTATCATGAAGGGGGG AGCCGTGGCTGCTGATGGACGCATCGAGCCAGGAGATATGCTATTACAGGTAAACGAGAT TAACTTTGAGAACATGAGTAATGACGACGCTGTCCGGGTACTGCGGGAGATTGTGCACAA ACCAGGGCCCATCACCTTGACTGTAGCCAAGTGCTGGGACCCAAGTCCACGTGGTTGCTT CACACTACCCAGGAGCGAGCCCATCCGGCCCATTGACCCCGCAGCATGGGTATCCCACAC TGCAGCCATGACCGGCACTTTCCCCGCTTACGGCATGAGCCCCTCCATGAGCACCATCAC CTCCACCAGCTCCTCCATCACCAGCTCCATCCCTGACACAGAGCGCCTAGACGACTTCCA CCTGTCCATCCACAGTGACATGGCTGCCATCGTAAAAGCCATGGCCTCCCCTGAATCTGG GCTGGAAGTCCGTGACCGCATGTGGCTCAAGATTACCATCCCCAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GAGCGCGTCACCTTGGCGGGCTTTTAAGGGCGTTCTGCAGCGACCCAGCTATAAGTTTTT CTTCAAGTCTATGGACGACGATTTCGGAGTGGTGAAGGAGGAGATCTCGGATGACAATGC CAAGCTGCCCTGCTTCAATGGCCGGGTGGTGTCCTGGCTGGTGTCAGCTGAGGGCTCACA CCCAGAGCCAGCTCCCTTCTGTGCTGACAACCCATCGGAACTGCCACCGCCCATGGAGCG CACAGGAGGCATTGGGGACTCCCGGCCCCCATCCTTCCACCCTCATGCTGGTGGGGGCAG CCAGGAGAACCTGGACAATGACACAGAGACAGACTCCTTGGTGTCTGCTCAGCGAGAGCG GCCACGCCGGAGAGATGGCCCAGAGCACACAACCCGGCTAAATGGAACTGCAAAGGGGGA ACGGCGGCGAGAGCCAGGGGGTTATGATAGCTCATCCACTCTCATGAGCAGCGAGTTGGA GACCACCAGCTTCTTTGATTCAGATGAGGATGACTCCACCAGCAGGTTCAGCAGCTCCAC ATAGCATAGCAGCGCTTCGCGCCTGAGGAGAAGACACAAGCGGCGGCGGCGGAAGCAGAA GGTTTCGCGGATTGAGCGGTCCTCCTCCTTCATCAGCATCACGGACTCCACCATGTCACT CAACATCATCACGGTCACTCTCAACATGGAAAAGTACAACTTCTTGGGCATCTCTATTGT GGGCCAAAGCAACGAGCGTGGTGATGGAGGCATCTACATTGGCTCTATCATGAAGGGGGG AGCCGTGGCTGCTGATGGACGCATCGAGCCAGGAGATATGCTATTACAGGTAAACGAGAT TAACTTTGAGAACATGAGTAATGACGACGCTGTCCGGGTACTGCGGGAGATTGTGCACAA ACCAGGGCCCATCACCTTGACTGTAGCCAAGTGCTGGGACCCAAGTCCACGTGGTTGCTT CACACTACCCAGGAGCGAGCCCATCCGGCCCATTGACCCCGCAGCATGGGTATCCCACAC TGCAGCCATGACCGGCACTTTCCCCGCTTACGGCATGAGCCCCTCCATGAGCACCATCAC CTCCACCAGCTCCTCCATCACCAGCTCCATCCCTGACACAGAGCGCCTAGACGACTTCCA CCTGTCCATCCACAGTGACATGGCTGCCATCGTAAAAGCCATGGCCTCCCCTGAATCTGG GCTGGAAGTCCGTGACCGCATGTGGCTCAAGATTACCATCCCCAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
960-1078, - strand, RNAz p=0.882425 | |
960-1051, - strand, RNAz p=0.833051 |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
960-1078, - strand, RNAz p=0.882425 | |
960-1051, - strand, RNAz p=0.833051 |
Aligned organism(s): 79 entry(ies) | More info |
Aligned organism(s): 79 entry(ies) | Help | Less info |
157-279, gnl|bosTau2|chr1 (51283749-51283627) | |
157-279, gnl|Hg17|chr3 (185364756-185364878) | |
157-279, gnl|Mm7|chr16 (20073430-20073552) | |
390-527, gnl|bosTau2|chr1 (51283204-51283067) | |
390-527, gnl|Hg17|chr3 (185365286-185365423) | |
390-527, gnl|Mm7|chr16 (20073961-20074098) | |
686-832, gnl|bosTau2|chr1 (51281903-51281757) | |
686-832, gnl|canFam2|chr34 (20069160-20069336) | |
686-832, gnl|danRer3|chr18 (34883755-34883920) | |
686-832, gnl|dasNov1|scaffold_155505 (1352-1528) | |
686-832, gnl|echTel1|scaffold_273817 (5208-5032) | |
686-832, gnl|fr1|chrUn (74771631-74771481) | |
686-832, gnl|galGal2|chr9 (15160298-15160490) | |
686-832, gnl|hg17|chr3 (185366614-185366790) | |
686-832, gnl|Hg17|chr3 (185366612-185366758) | |
686-832, gnl|loxAfr1|scaffold_44629 (9709-9885) | |
686-832, gnl|mm7|chr16 (20075658-20075826) | |
686-832, gnl|Mm7|chr16 (20075656-20075802) | |
686-832, gnl|monDom2|scaffold_167 (1456846-1457003) | |
686-832, gnl|oryCun1|scaffold_174838 (67201-67377) | |
686-832, gnl|panTro1|chr2 (189317066-189317242) | |
686-832, gnl|rheMac2|chr2 (102504096-102503920) | |
686-832, gnl|rn3|chr11 (82661496-82661336) | |
686-832, gnl|tetNig1|chr15 (4198615-4198758) | |
686-832, gnl|xenTro1|scaffold_244 (22991-23177) | |
689-831, gnl|bosTau2|chr16 (37905846-37905988) | |
689-831, gnl|canFam2|chr5 (59513433-59513580) | |
689-831, gnl|canFam2|chr5 (59513433-59513580) | |
689-831, gnl|danRer3|chr11 (24514898-24515043) | |
689-831, gnl|danRer3|chr7 (51703763-51703596) | |
689-831, gnl|dasNov1|scaffold_155505 (1497-1350) | |
689-831, gnl|dasNov1|scaffold_155505 (1496-1350) | |
689-831, gnl|echTel1|scaffold_273817 (5063-5210) | |
689-831, gnl|echTel1|scaffold_273817 (5063-5210) | |
689-831, gnl|fr1|chrUn (41538810-41538957) | |
689-831, gnl|fr1|chrUn (11465124-11465269) | |
689-831, gnl|galGal2|chr21 (2213825-2213678) | |
689-831, gnl|galGal2|chr21 (2213824-2213678) | |
689-831, gnl|hg17|chr1 (1315339-1315486) | |
689-831, gnl|Hg17|chr1 (1315481-1315339) | |
689-831, gnl|hg17|chr1_random (275667-275812) | |
689-831, gnl|loxAfr1|scaffold_44629 (9854-9707) | |
689-831, gnl|loxAfr1|scaffold_44629 (9854-9707) | |
689-831, gnl|mm7|chr4 (154844571-154844424) | |
689-831, gnl|mm7|chr4 (154844571-154844424) | |
689-831, gnl|Mm7|chr4 (154844427-154844569) | |
689-831, gnl|monDom2|scaffold_196 (78742-78889) | |
689-831, gnl|monDom2|scaffold_196 (78743-78889) | |
689-831, gnl|oryCun1|scaffold_174838 (67346-67199) | |
689-831, gnl|oryCun1|scaffold_174838 (67346-67199) | |
689-831, gnl|panTro1|chr1 (1204786-1204933) | |
689-831, gnl|panTro1|chr1 (1204786-1204933) | |
689-831, gnl|rheMac2|chr2 (102503951-102504098) | |
689-831, gnl|rheMac2|chr2 (102503951-102504098) | |
689-831, gnl|rn3|chr5 (172723948-172723801) | |
689-831, gnl|rn3|chr5 (172723948-172723801) | |
689-831, gnl|tetNig1|chr9 (8525630-8525777) | |
689-831, gnl|tetNig1|chr9 (8525630-8525775) | |
689-831, gnl|xenTro1|scaffold_414 (429047-428903) | |
689-831, gnl|xenTro1|scaffold_414 (429047-428903) | |
960-1125, gnl|bosTau2|chr1 (51281201-51281036) | |
960-1125, gnl|canFam2|chr34 (20069872-20070090) | |
960-1125, gnl|danRer3|chr18 (34887033-34887260) | |
960-1125, gnl|dasNov1|scaffold_155505 (2039-2250) | |
960-1125, gnl|echTel1|scaffold_273817 (4534-4346) | |
960-1125, gnl|fr1|chrUn (74771120-74770934) | |
960-1125, gnl|galGal2|chr9 (15161758-15161944) | |
960-1125, gnl|hg17|chr3 (185367288-185367506) | |
960-1125, gnl|Hg17|chr3 (185367301-185367466) | |
960-1125, gnl|loxAfr1|scaffold_44629 (10380-10596) | |
960-1125, gnl|mm7|chr16 (20076260-20076478) | |
960-1125, gnl|Mm7|chr16 (20076273-20076438) | |
960-1125, gnl|monDom2|scaffold_167 (1458682-1458896) | |
960-1125, gnl|oryCun1|scaffold_174838 (67901-68102) | |
960-1125, gnl|panTro1|chr2 (189317742-189317960) | |
960-1125, gnl|rheMac2|chr2 (102503423-102503205) | |
960-1125, gnl|rn3|chr11 (82660909-82660689) | |
960-1125, gnl|tetNig1|chr15 (4199120-4199323) | |
960-1125, gnl|xenTro1|scaffold_244 (26472-26660) |
Aligned organism(s): 79 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
157-279, gnl|bosTau2|chr1 (51283749-51283627) | |
157-279, gnl|Hg17|chr3 (185364756-185364878) | |
157-279, gnl|Mm7|chr16 (20073430-20073552) | |
390-527, gnl|bosTau2|chr1 (51283204-51283067) | |
390-527, gnl|Hg17|chr3 (185365286-185365423) | |
390-527, gnl|Mm7|chr16 (20073961-20074098) | |
686-832, gnl|bosTau2|chr1 (51281903-51281757) | |
686-832, gnl|canFam2|chr34 (20069160-20069336) | |
686-832, gnl|danRer3|chr18 (34883755-34883920) | |
686-832, gnl|dasNov1|scaffold_155505 (1352-1528) | |
686-832, gnl|echTel1|scaffold_273817 (5208-5032) | |
686-832, gnl|fr1|chrUn (74771631-74771481) | |
686-832, gnl|galGal2|chr9 (15160298-15160490) | |
686-832, gnl|hg17|chr3 (185366614-185366790) | |
686-832, gnl|Hg17|chr3 (185366612-185366758) | |
686-832, gnl|loxAfr1|scaffold_44629 (9709-9885) | |
686-832, gnl|mm7|chr16 (20075658-20075826) | |
686-832, gnl|Mm7|chr16 (20075656-20075802) | |
686-832, gnl|monDom2|scaffold_167 (1456846-1457003) | |
686-832, gnl|oryCun1|scaffold_174838 (67201-67377) | |
686-832, gnl|panTro1|chr2 (189317066-189317242) | |
686-832, gnl|rheMac2|chr2 (102504096-102503920) | |
686-832, gnl|rn3|chr11 (82661496-82661336) | |
686-832, gnl|tetNig1|chr15 (4198615-4198758) | |
686-832, gnl|xenTro1|scaffold_244 (22991-23177) | |
689-831, gnl|bosTau2|chr16 (37905846-37905988) | |
689-831, gnl|canFam2|chr5 (59513433-59513580) | |
689-831, gnl|canFam2|chr5 (59513433-59513580) | |
689-831, gnl|danRer3|chr11 (24514898-24515043) | |
689-831, gnl|danRer3|chr7 (51703763-51703596) | |
689-831, gnl|dasNov1|scaffold_155505 (1497-1350) | |
689-831, gnl|dasNov1|scaffold_155505 (1496-1350) | |
689-831, gnl|echTel1|scaffold_273817 (5063-5210) | |
689-831, gnl|echTel1|scaffold_273817 (5063-5210) | |
689-831, gnl|fr1|chrUn (41538810-41538957) | |
689-831, gnl|fr1|chrUn (11465124-11465269) | |
689-831, gnl|galGal2|chr21 (2213825-2213678) | |
689-831, gnl|galGal2|chr21 (2213824-2213678) | |
689-831, gnl|hg17|chr1 (1315339-1315486) | |
689-831, gnl|Hg17|chr1 (1315481-1315339) | |
689-831, gnl|hg17|chr1_random (275667-275812) | |
689-831, gnl|loxAfr1|scaffold_44629 (9854-9707) | |
689-831, gnl|loxAfr1|scaffold_44629 (9854-9707) | |
689-831, gnl|mm7|chr4 (154844571-154844424) | |
689-831, gnl|mm7|chr4 (154844571-154844424) | |
689-831, gnl|Mm7|chr4 (154844427-154844569) | |
689-831, gnl|monDom2|scaffold_196 (78742-78889) | |
689-831, gnl|monDom2|scaffold_196 (78743-78889) | |
689-831, gnl|oryCun1|scaffold_174838 (67346-67199) | |
689-831, gnl|oryCun1|scaffold_174838 (67346-67199) | |
689-831, gnl|panTro1|chr1 (1204786-1204933) | |
689-831, gnl|panTro1|chr1 (1204786-1204933) | |
689-831, gnl|rheMac2|chr2 (102503951-102504098) | |
689-831, gnl|rheMac2|chr2 (102503951-102504098) | |
689-831, gnl|rn3|chr5 (172723948-172723801) | |
689-831, gnl|rn3|chr5 (172723948-172723801) | |
689-831, gnl|tetNig1|chr9 (8525630-8525777) | |
689-831, gnl|tetNig1|chr9 (8525630-8525775) | |
689-831, gnl|xenTro1|scaffold_414 (429047-428903) | |
689-831, gnl|xenTro1|scaffold_414 (429047-428903) | |
960-1125, gnl|bosTau2|chr1 (51281201-51281036) | |
960-1125, gnl|canFam2|chr34 (20069872-20070090) | |
960-1125, gnl|danRer3|chr18 (34887033-34887260) | |
960-1125, gnl|dasNov1|scaffold_155505 (2039-2250) | |
960-1125, gnl|echTel1|scaffold_273817 (4534-4346) | |
960-1125, gnl|fr1|chrUn (74771120-74770934) | |
960-1125, gnl|galGal2|chr9 (15161758-15161944) | |
960-1125, gnl|hg17|chr3 (185367288-185367506) | |
960-1125, gnl|Hg17|chr3 (185367301-185367466) | |
960-1125, gnl|loxAfr1|scaffold_44629 (10380-10596) | |
960-1125, gnl|mm7|chr16 (20076260-20076478) | |
960-1125, gnl|Mm7|chr16 (20076273-20076438) | |
960-1125, gnl|monDom2|scaffold_167 (1458682-1458896) | |
960-1125, gnl|oryCun1|scaffold_174838 (67901-68102) | |
960-1125, gnl|panTro1|chr2 (189317742-189317960) | |
960-1125, gnl|rheMac2|chr2 (102503423-102503205) | |
960-1125, gnl|rn3|chr11 (82660909-82660689) | |
960-1125, gnl|tetNig1|chr15 (4199120-4199323) | |
960-1125, gnl|xenTro1|scaffold_244 (26472-26660) |
Expressed library(ies): 1 entry(ies) | More info |
Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cty (0.10408) |