Non-Coding RNA Search

Ss1.1-Pig3-SRG8001F14.5

Sequence:


               
               TATTTGATTGGTGGCCTGTATCATGAAAAGACAGACAGATTGTTTGTTGTTGGAGGAACA
AACCAAGGAATTATTCATATAATGAGCTGTACTGCATCGGGATTGGTCCATGTTACCAGT
CTGCAGGGAGGGCATGCTGCTACAGTCCGATCTTTCTGCTGGAATATGCAGGATGATTCT
TTGCTGACTGGAGGAGAAGATGCACAGTTGTTACTTTGGAAACCTGGAGCAACGGAGAAG
ACATTTACAAAGAAAGACAGCATGAAAATAGCCTCCTCTGTGTACCAGCGAGTCCGAGTT
CACAGTAATGATTCATATAAGAGAAGGAAAAAGCAGTGATGTTACCTTAGGAGTTGACCT
CATAGGTTTTATTTAGAGTTGCAAACAATTATTTCTGTATACTATCTGTGCTTAAAGATC
ATCTTTAAAAACAAGCCAGTCCTGGAAAAATGTTGGGAATATTTTAATTCAGATCTTCAT
GTATTCTAAAATTATTTTTTTTAAGCCACCAGTTGAGTGTATAATCAGTGACTTGAAAGT
AAAATTACATTCCTCATTTTAAAAACCCATCTGTTGAATTAGTGAATGTTGGGTTTAAAG
AAATAGCTTTGATAAGTGTTTTTTAGAAGTAAATGGCTGATGTGACTTTAAAAAGCAGGT
GGTTTGGGCTATGTTTTTTTAAGCTCAGTTTTACATTTTAAATCGTCTTCATTATTTTTA
AAGCCAAATCAGAGTATTTTCTTCATTTTGAGAAGCTCCTACTTGCTTAATACATATAGA
TTACACTAGTGTATTTAAATATAAATATTCTAATGAGTTTAAATAGAATTAAATGTTTTC
AGAAATAAAGTGATTTGCATTTATTTGAGAAAAATACATTTAGTAAATATTTTCATCTAT
CCTTTAATATTGTTTGTTAAACAGTAAACAGGTGTTTTGCTGATGAAACAGAAATTACCT
TGTGAAATTCACTTTGAAATTCAAAGTGAATATATACAAATGAAAGTATTTATAATAGTA
AAATAACTTTATTTTAAAATATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTTGATTGGTGGCCTGTATCATGAAAAGACAGACAGATTGTTTGTTGTTGGAGGAACA
AACCAAGGAATTATTCATATAATGAGCTGTACTGCATCGGGATTGGTCCATGTTACCAGT
CTGCAGGGAGGGCATGCTGCTACAGTCCGATCTTTCTGCTGGAATATGCAGGATGATTCT
TTGCTGACTGGAGGAGAAGATGCACAGTTGTTACTTTGGAAACCTGGAGCAACGGAGAAG
ACATTTACAAAGAAAGACAGCATGAAAATAGCCTCCTCTGTGTACCAGCGAGTCCGAGTT
CACAGTAATGATTCATATAAGAGAAGGAAAAAGCAGTGATGTTACCTTAGGAGTTGACCT
CATAGGTTTTATTTAGAGTTGCAAACAATTATTTCTGTATACTATCTGTGCTTAAAGATC
ATCTTTAAAAACAAGCCAGTCCTGGAAAAATGTTGGGAATATTTTAATTCAGATCTTCAT
GTATTCTAAAATTATTTTTTTTAAGCCACCAGTTGAGTGTATAATCAGTGACTTGAAAGT
AAAATTACATTCCTCATTTTAAAAACCCATCTGTTGAATTAGTGAATGTTGGGTTTAAAG
AAATAGCTTTGATAAGTGTTTTTTAGAAGTAAATGGCTGATGTGACTTTAAAAAGCAGGT
GGTTTGGGCTATGTTTTTTTAAGCTCAGTTTTACATTTTAAATCGTCTTCATTATTTTTA
AAGCCAAATCAGAGTATTTTCTTCATTTTGAGAAGCTCCTACTTGCTTAATACATATAGA
TTACACTAGTGTATTTAAATATAAATATTCTAATGAGTTTAAATAGAATTAAATGTTTTC
AGAAATAAAGTGATTTGCATTTATTTGAGAAAAATACATTTAGTAAATATTTTCATCTAT
CCTTTAATATTGTTTGTTAAACAGTAAACAGGTGTTTTGCTGATGAAACAGAAATTACCT
TGTGAAATTCACTTTGAAATTCAAAGTGAATATATACAAATGAAAGTATTTATAATAGTA
AAATAACTTTATTTTAAAATATTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-789, gnl|bosTau2|chr10 (49395907-49395100)
               

               
               1-789, gnl|Hg17|chr14 (63135588-63134808)
               

               
               1-789, gnl|Mm7|chr12 (73591113-73590341)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-789, gnl|bosTau2|chr10 (49395907-49395100)
               

               
               1-789, gnl|Hg17|chr14 (63135588-63134808)
               

               
               1-789, gnl|Mm7|chr12 (73591113-73590341)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               fce (0.271592)
               

               
               pan (0.23596)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               pan (0.23596)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

	1-789, gnl\|bosTau2\|chr10 (49395907-49395100)
	1-789, gnl\|Hg17\|chr14 (63135588-63134808)
	1-789, gnl\|Mm7\|chr12 (73591113-73590341)

	fce (0.271592)
	pan (0.23596)
	kid (0.129735)
	sug (0.127291)
	tra (0.123092)