Non-Coding RNA Search

Ss1.1-Pig3-SRG8001G01.5

Sequence:


               
               CCTGCCGGACTGCTGGAGGCGGCCGCAGCGCCATGTTGGATGCTCTGCTCGTTGAGTGAA
GAAAATCCGCCGGCATCGCCTGAGCCCCGCTACCGAGAAGGGCGCCGCTTCCCCCGGGGA
GGGGGATAAAGACCCCCCGCCGCCGGCCCATGAGGATATTGCCGTGAAAGGCTCAGCGGC
TGCAGCAGGAACCGGACCCGGCACCGGAGCGGCGGCGGCGGCGGCGGCAGCAGCGGTACC
GCCTCCTCACCCGGCGGCAGCAGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCCCCTCC
TCACCCGAACATCAGGGCCCTCCAGACCCAGGCGCCCCAACAAATTCTTAGAGGACCTGT
GCAGCAGACTCTCGAGGATCGAATCTTCACTCCTACTGTCTCGGCAGTATACAGCACGGT
AACACAAGTAGCAAGGCAGCCGGGACCCCCGACCCCTTCCCCTTACTCAGCACATGAAAT
CTTGGCCGGAGCTTTTGGGGTGACCCGGCAGCAGCACTGCGGGGGACCCCGGGACCCTCT
GCACTACTGTGAAAACTAGCTCCGTCGGCCTTGCTTCCGCAGCCCTTCCCTTTTGGAGCT
GGGGACCCTTCCCCCTTCTCGCCTCTCCTCCCCAACCCCCCCCCCCCCTTTATTAGGCCG
AATTTGCTGGTGCCCGGGACCAGCCCTGCAGGGAAGGCTTTTCTCTGATTGTTGTGAGGG
CTACACCCTCCTCCTCATCTCCCTTCAGCTCTCCCTGCAGCGGGGCATAGTGGGCTTCCC
TAAATATTATTAATACCTAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCCGGACTGCTGGAGGCGGCCGCAGCGCCATGTTGGATGCTCTGCTCGTTGAGTGAA
GAAAATCCGCCGGCATCGCCTGAGCCCCGCTACCGAGAAGGGCGCCGCTTCCCCCGGGGA
GGGGGATAAAGACCCCCCGCCGCCGGCCCATGAGGATATTGCCGTGAAAGGCTCAGCGGC
TGCAGCAGGAACCGGACCCGGCACCGGAGCGGCGGCGGCGGCGGCGGCAGCAGCGGTACC
GCCTCCTCACCCGGCGGCAGCAGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCCCCTCC
TCACCCGAACATCAGGGCCCTCCAGACCCAGGCGCCCCAACAAATTCTTAGAGGACCTGT
GCAGCAGACTCTCGAGGATCGAATCTTCACTCCTACTGTCTCGGCAGTATACAGCACGGT
AACACAAGTAGCAAGGCAGCCGGGACCCCCGACCCCTTCCCCTTACTCAGCACATGAAAT
CTTGGCCGGAGCTTTTGGGGTGACCCGGCAGCAGCACTGCGGGGGACCCCGGGACCCTCT
GCACTACTGTGAAAACTAGCTCCGTCGGCCTTGCTTCCGCAGCCCTTCCCTTTTGGAGCT
GGGGACCCTTCCCCCTTCTCGCCTCTCCTCCCCAACCCCCCCCCCCCCTTTATTAGGCCG
AATTTGCTGGTGCCCGGGACCAGCCCTGCAGGGAAGGCTTTTCTCTGATTGTTGTGAGGG
CTACACCCTCCTCCTCATCTCCCTTCAGCTCTCCCTGCAGCGGGGCATAGTGGGCTTCCC
TAAATATTATTAATACCTAATAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q29360_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q29360_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               533-780, - strand, RNAz p=0.887561

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               533-780, - strand, RNAz p=0.887561

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-171, gnl|bosTau2|chr2 (85204618-85204788)
               

               
               1-171, gnl|Hg17|chr1 (21248690-21248520)
               

               
               1-171, gnl|Mm7|chr4 (137371899-137372069)
               


               
               533-804, gnl|bosTau2|chr2 (85205222-85205522)
               

               
               533-804, gnl|canFam2|chr2 (80715571-80715147)
               

               
               533-804, gnl|dasNov1|scaffold_18867 (11831-11390)
               

               
               533-804, gnl|echTel1|scaffold_310866 (123773-123355)
               

               
               533-804, gnl|hg17|chr1 (21247383-21247791)
               

               
               533-804, gnl|Hg17|chr1 (21247783-21247512)
               

               
               533-804, gnl|mm7|chr4 (137373131-137372738)
               

               
               533-804, gnl|monDom2|scaffold_90 (2657570-2658004)
               

               
               533-804, gnl|oryCun1|scaffold_213008 (185796-186186)
               

               
               533-804, gnl|panTro1|chr1 (21569483-21569892)
               

               
               533-804, gnl|rheMac2|chr1 (23844858-23845251)
               

               
               533-804, gnl|rn3|chr5 (156767124-156766741)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-171, gnl|bosTau2|chr2 (85204618-85204788)
               

               
               1-171, gnl|Hg17|chr1 (21248690-21248520)
               

               
               1-171, gnl|Mm7|chr4 (137371899-137372069)
               


               
               533-804, gnl|bosTau2|chr2 (85205222-85205522)
               

               
               533-804, gnl|canFam2|chr2 (80715571-80715147)
               

               
               533-804, gnl|dasNov1|scaffold_18867 (11831-11390)
               

               
               533-804, gnl|echTel1|scaffold_310866 (123773-123355)
               

               
               533-804, gnl|hg17|chr1 (21247383-21247791)
               

               
               533-804, gnl|Hg17|chr1 (21247783-21247512)
               

               
               533-804, gnl|mm7|chr4 (137373131-137372738)
               

               
               533-804, gnl|monDom2|scaffold_90 (2657570-2658004)
               

               
               533-804, gnl|oryCun1|scaffold_213008 (185796-186186)
               

               
               533-804, gnl|panTro1|chr1 (21569483-21569892)
               

               
               533-804, gnl|rheMac2|chr1 (23844858-23845251)
               

               
               533-804, gnl|rn3|chr5 (156767124-156766741)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	1-171, gnl\|bosTau2\|chr2 (85204618-85204788)
	1-171, gnl\|Hg17\|chr1 (21248690-21248520)
	1-171, gnl\|Mm7\|chr4 (137371899-137372069)

	533-804, gnl\|bosTau2\|chr2 (85205222-85205522)
	533-804, gnl\|canFam2\|chr2 (80715571-80715147)
	533-804, gnl\|dasNov1\|scaffold_18867 (11831-11390)
	533-804, gnl\|echTel1\|scaffold_310866 (123773-123355)
	533-804, gnl\|hg17\|chr1 (21247383-21247791)
	533-804, gnl\|Hg17\|chr1 (21247783-21247512)
	533-804, gnl\|mm7\|chr4 (137373131-137372738)
	533-804, gnl\|monDom2\|scaffold_90 (2657570-2658004)
	533-804, gnl\|oryCun1\|scaffold_213008 (185796-186186)
	533-804, gnl\|panTro1\|chr1 (21569483-21569892)
	533-804, gnl\|rheMac2\|chr1 (23844858-23845251)
	533-804, gnl\|rn3\|chr5 (156767124-156766741)