Non-Coding RNA Search

Ss1.1-Pig3-SRG8001G02.5

Sequence:


               
               AGCAGCGTAGAGATGTAGAGCCTGGGCCCGACTTCACACCACTGTGTAATTTCTGTTGTC
AGACTGCTGTTCTTAGTGAGGAGGCATTCGGAATGTCACAGAGGCCAGACCTACAGGCTC
TTGGACTCCTGGACCGACGGGGCATCTTGGAAAAGCTGTGTTTAGTTTGATACCTGGAGC
AGAAGAGGGGAAAGCCCAGGGACAGAGTGTGAGGGGGTGACCTGTTATGTGCAGTACATC
CGGGACTGAATTTCTGAGCCCCTGATCCAAAGCTGGCTTCATTTCCGTTAATGCTGGTGC
TCCCCAGCATAGAGTACACCCGGTGTGGCCTCTCCTCTCTGCACCTCATTGCCACCACCG
CCCCCGCCCCCAACATGGGGAAGGTCAGCATTGAAAGGGTTACGCAGCAAGCTTTAGTTC
ATGGTTTTAATTCCTTGGTCACGTAAATCGGGCAATGCCAAAGGCTGTGTGTTTGAAAGT
GTGGGCCTTATAAGAAGGGAGAGTAAATTTTAGGGGGCTTTATTGAAGAAATAAAAGATA
CCTTTTGAATCTTTCTTCCCTAGAGCCCTCATTTTCATAACTTTGTTCCTGTTGGTTTAA
TTCAACATACAAAGGTAAGATGATGAGTCCACCTGCCTTGGAGCAGAACCAGGTCTGAAC
TTTTTCAAATCCTTGACATATCCAACGTCAAGGATTTGAAACACGCAATCATAGGTTACA
TAGTTGAGTTTTATGTCCTATTGGATTAAGTTTTTTTTTTAATGTTTGAAAGCATAGTTT
TATGGTAGTCTTTTTGGGAAGAATCCAGTATTATCTAAAATTATTTGCAAAGTTAAATGT
ATTTTACATAACAAAGTTTTTAGACTGTTGAGAAGTAATTGAAGATAGAGTGATGAGTAA
ATGTTTAGGATGAGGTAATTTATTTCAATAAATCTTTCAAAAGCCTTATCTTGAAATGCT
GTTAGTAAATTTCTGTGATTTTTTTTTTCTTTTTAAAATTTGTTTTGCTGAGAGCATAGC
AGCTATTTGTTTTTATTGTAAAACAATAATAATAAAAGGCAAACTCTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGCGTAGAGATGTAGAGCCTGGGCCCGACTTCACACCACTGTGTAATTTCTGTTGTC
AGACTGCTGTTCTTAGTGAGGAGGCATTCGGAATGTCACAGAGGCCAGACCTACAGGCTC
TTGGACTCCTGGACCGACGGGGCATCTTGGAAAAGCTGTGTTTAGTTTGATACCTGGAGC
AGAAGAGGGGAAAGCCCAGGGACAGAGTGTGAGGGGGTGACCTGTTATGTGCAGTACATC
CGGGACTGAATTTCTGAGCCCCTGATCCAAAGCTGGCTTCATTTCCGTTAATGCTGGTGC
TCCCCAGCATAGAGTACACCCGGTGTGGCCTCTCCTCTCTGCACCTCATTGCCACCACCG
CCCCCGCCCCCAACATGGGGAAGGTCAGCATTGAAAGGGTTACGCAGCAAGCTTTAGTTC
ATGGTTTTAATTCCTTGGTCACGTAAATCGGGCAATGCCAAAGGCTGTGTGTTTGAAAGT
GTGGGCCTTATAAGAAGGGAGAGTAAATTTTAGGGGGCTTTATTGAAGAAATAAAAGATA
CCTTTTGAATCTTTCTTCCCTAGAGCCCTCATTTTCATAACTTTGTTCCTGTTGGTTTAA
TTCAACATACAAAGGTAAGATGATGAGTCCACCTGCCTTGGAGCAGAACCAGGTCTGAAC
TTTTTCAAATCCTTGACATATCCAACGTCAAGGATTTGAAACACGCAATCATAGGTTACA
TAGTTGAGTTTTATGTCCTATTGGATTAAGTTTTTTTTTTAATGTTTGAAAGCATAGTTT
TATGGTAGTCTTTTTGGGAAGAATCCAGTATTATCTAAAATTATTTGCAAAGTTAAATGT
ATTTTACATAACAAAGTTTTTAGACTGTTGAGAAGTAATTGAAGATAGAGTGATGAGTAA
ATGTTTAGGATGAGGTAATTTATTTCAATAAATCTTTCAAAAGCCTTATCTTGAAATGCT
GTTAGTAAATTTCTGTGATTTTTTTTTTCTTTTTAAAATTTGTTTTGCTGAGAGCATAGC
AGCTATTTGTTTTTATTGTAAAACAATAATAATAAAAGGCAAACTCTCTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               811-1076, gnl|bosTau2|chr10 (30341358-30341611)
               

               
               811-1076, gnl|Hg17|chr16 (54953116-54952866)
               

               
               811-1076, gnl|Mm7|chr8 (92561101-92560851)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               811-1076, gnl|bosTau2|chr10 (30341358-30341611)
               

               
               811-1076, gnl|Hg17|chr16 (54953116-54952866)
               

               
               811-1076, gnl|Mm7|chr8 (92561101-92560851)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

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               pgl (0.7109)
               

               
               ldo (0.582016)
               

               
               cli (0.458435)
               

               
               cov (0.396458)
               

               
               cje (0.330469)
               

               
               che (0.272628)
               

               
               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               eje (0.0988338)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.7109)
               

               
               ldo (0.582016)
               

               
               cli (0.458435)
               

               
               cov (0.396458)
               

               
               cje (0.330469)
               

               
               che (0.272628)
               

               
               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               eje (0.0988338)

	811-1076, gnl\|bosTau2\|chr10 (30341358-30341611)
	811-1076, gnl\|Hg17\|chr16 (54953116-54952866)
	811-1076, gnl\|Mm7\|chr8 (92561101-92560851)

	pgl (0.7109)
	ldo (0.582016)
	cli (0.458435)
	cov (0.396458)
	cje (0.330469)
	che (0.272628)
	cly (0.241284)
	ebs (0.236602)
	ecc (0.23007)
	ece (0.229305)
	cty (0.20816)
	fli (0.202881)
	fcc (0.197785)
	eye (0.170503)
	nco (0.161734)
	mga (0.160205)
	fco (0.157208)
	tbr (0.154178)
	fat (0.147427)
	ski (0.146735)
	lnt (0.142308)
	nmm (0.132802)
	eje (0.0988338)