Non-Coding RNA Search

Ss1.1-Pig3-SRG8001H05.5

Sequence:


               
               CCTGGCCCCGGAACTCCGCTTTTCCCCAGCCTCTGAACGTGGGGGCCAGGCCCTGCCTTC
CTCCGGGGGACTGAGGCAAGGCGTCCCTCTTTCGCACACAGCTGAAAGGGGAAGCTCTGA
AGGCCCGAAGTGGGAGACGATCTGTTGTCGAGGGGCCTTGTATCTGGGTGTACTCCGAGA
ATCTTCTTAGCCTTGCCTTTGAGGGGTCTCATGCAGAGAGGAGCCTCGCAGACTCTGTAA
AAAACACATGGAAATGACAGGCTGCAAAGTGAGAAGGTTACCTAGAGCCTGGCCCAGTAC
AGCTTCCTTATTAGACACATGGGGAAACTCAGGCTCCACAAGCAGAAGGGGCCTGTACAG
GACCCAGCCGGGCTAAGAACCCAGGACCCTGGGAACCTAGCCCCGGGCCTTCTCCGAGCC
TGGGCTGTGCAAGTGCAGACTTGGTCCTGAAAAATGGTCCCAGCTGATGGCAGCGTCAGG
CTGGGAGGTGGGGCTTCTGGACAGCTCGCCCAAGTGGAGGATGGGGCGCTTGGGCAGAAT
GCCTCCCATGGAGGGACAGAACCTTCACTAGGACCCCAGCACTATTCAGGACCCCTGGCA
GATTGTATCTCTGGTAGAGAAAGACTGCTTTGAGAAGCTGCAATATCAGCTCCACCTTTG
ACCCCAAACCGGCATCTTTCCTCTGCTCCCTCAGCCCCACAAAGACAAGGGATTTGACGC
CAAGAGCAAGCCAAAAGAGTCACACCAAAGGCAGGTGTCCTTCACCAGGGAGTCGCCAGA
TACGTGGCACCCACCTCCACCTCCCACGCCCTGCCTAGTCTCAGCCCCATCCACTGTCAC
CAGTAGCCCGTCCCCCAAGGGCCCGTCTTCCAACCCTGAAGCGGTAACCTCCTGACCTCT
AGTGGCGAGAGCGAGGAACTGCATCTCCTGGCCCGAGCATGTCCTCCCTTTGTTCCTTCG
CCAACCGAGAGAACCTCCCGATGCATGGACTGGCTGTCTTCGACGCAGACTCGTGCACTG
CTTCCCACCGTTTGGCTCTCACGTGCCGGCTGCAGAAACCGTCCTTCACCTGCAGCCCCA
CACACAATTTTTGTACTTTCGTCTGACCTACCCGAAGGTGTCCTTTTTAAGTCTTATTTG
TTAATATTTATAATGACATATAATTCAAAGTAAATGCTCATTGAGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGCCCCGGAACTCCGCTTTTCCCCAGCCTCTGAACGTGGGGGCCAGGCCCTGCCTTC
CTCCGGGGGACTGAGGCAAGGCGTCCCTCTTTCGCACACAGCTGAAAGGGGAAGCTCTGA
AGGCCCGAAGTGGGAGACGATCTGTTGTCGAGGGGCCTTGTATCTGGGTGTACTCCGAGA
ATCTTCTTAGCCTTGCCTTTGAGGGGTCTCATGCAGAGAGGAGCCTCGCAGACTCTGTAA
AAAACACATGGAAATGACAGGCTGCAAAGTGAGAAGGTTACCTAGAGCCTGGCCCAGTAC
AGCTTCCTTATTAGACACATGGGGAAACTCAGGCTCCACAAGCAGAAGGGGCCTGTACAG
GACCCAGCCGGGCTAAGAACCCAGGACCCTGGGAACCTAGCCCCGGGCCTTCTCCGAGCC
TGGGCTGTGCAAGTGCAGACTTGGTCCTGAAAAATGGTCCCAGCTGATGGCAGCGTCAGG
CTGGGAGGTGGGGCTTCTGGACAGCTCGCCCAAGTGGAGGATGGGGCGCTTGGGCAGAAT
GCCTCCCATGGAGGGACAGAACCTTCACTAGGACCCCAGCACTATTCAGGACCCCTGGCA
GATTGTATCTCTGGTAGAGAAAGACTGCTTTGAGAAGCTGCAATATCAGCTCCACCTTTG
ACCCCAAACCGGCATCTTTCCTCTGCTCCCTCAGCCCCACAAAGACAAGGGATTTGACGC
CAAGAGCAAGCCAAAAGAGTCACACCAAAGGCAGGTGTCCTTCACCAGGGAGTCGCCAGA
TACGTGGCACCCACCTCCACCTCCCACGCCCTGCCTAGTCTCAGCCCCATCCACTGTCAC
CAGTAGCCCGTCCCCCAAGGGCCCGTCTTCCAACCCTGAAGCGGTAACCTCCTGACCTCT
AGTGGCGAGAGCGAGGAACTGCATCTCCTGGCCCGAGCATGTCCTCCCTTTGTTCCTTCG
CCAACCGAGAGAACCTCCCGATGCATGGACTGGCTGTCTTCGACGCAGACTCGTGCACTG
CTTCCCACCGTTTGGCTCTCACGTGCCGGCTGCAGAAACCGTCCTTCACCTGCAGCCCCA
CACACAATTTTTGTACTTTCGTCTGACCTACCCGAAGGTGTCCTTTTTAAGTCTTATTTG
TTAATATTTATAATGACATATAATTCAAAGTAAATGCTCATTGAGATC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1037-1155, - strand, RNAz p=0.598677
               

               
               1039-1157, - strand, RNAz p=0.995858

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1037-1155, - strand, RNAz p=0.598677
               

               
               1039-1157, - strand, RNAz p=0.995858

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               141-1176, gnl|bosTau2|chr19 (17013524-17014546)
               

               
               141-1176, gnl|canFam2|chr9 (48812674-48813276)
               

               
               141-1176, gnl|dasNov1|scaffold_79975 (3773-3215)
               

               
               141-1176, gnl|hg17|chr17 (33277886-33278525)
               

               
               141-1176, gnl|Hg17|chr17_random (207433-209125)
               

               
               141-1176, gnl|mm7|chr11 (75851622-75851091)
               

               
               141-1176, gnl|Mm7|chr11 (75851684-75850679)
               

               
               141-1176, gnl|panTro1|chr19 (36457394-36458032)
               

               
               141-1176, gnl|rheMac2|chr16 (47862268-47862900)
               

               
               141-1176, gnl|rn3|chr10 (63127924-63127431)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               141-1176, gnl|bosTau2|chr19 (17013524-17014546)
               

               
               141-1176, gnl|canFam2|chr9 (48812674-48813276)
               

               
               141-1176, gnl|dasNov1|scaffold_79975 (3773-3215)
               

               
               141-1176, gnl|hg17|chr17 (33277886-33278525)
               

               
               141-1176, gnl|Hg17|chr17_random (207433-209125)
               

               
               141-1176, gnl|mm7|chr11 (75851622-75851091)
               

               
               141-1176, gnl|Mm7|chr11 (75851684-75850679)
               

               
               141-1176, gnl|panTro1|chr19 (36457394-36458032)
               

               
               141-1176, gnl|rheMac2|chr16 (47862268-47862900)
               

               
               141-1176, gnl|rn3|chr10 (63127924-63127431)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eye (0.170503)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               ecc (0.115035)

	1037-1155, - strand, RNAz p=0.598677
	1039-1157, - strand, RNAz p=0.995858

	141-1176, gnl\|bosTau2\|chr19 (17013524-17014546)
	141-1176, gnl\|canFam2\|chr9 (48812674-48813276)
	141-1176, gnl\|dasNov1\|scaffold_79975 (3773-3215)
	141-1176, gnl\|hg17\|chr17 (33277886-33278525)
	141-1176, gnl\|Hg17\|chr17_random (207433-209125)
	141-1176, gnl\|mm7\|chr11 (75851622-75851091)
	141-1176, gnl\|Mm7\|chr11 (75851684-75850679)
	141-1176, gnl\|panTro1\|chr19 (36457394-36458032)
	141-1176, gnl\|rheMac2\|chr16 (47862268-47862900)
	141-1176, gnl\|rn3\|chr10 (63127924-63127431)