Non-Coding RNA Search

Ss1.1-Pig3-SRG8001H19.3

Sequence:


               
               GGAGAGAAGCTCCGGGGCACCCTGTACAATACTGGTCGACACGTCTCCTTCCTGCCTGCG
CCCCGGCCCGTGGTCAATGTGTCAGGGGGGCCCCTCCTTTATAGCCACCGGCTCAGCGAA
CTGCGGCTGCTATTTGGAGCACGTGACGGAGCTGGCTCGGAACACCAGATCAATCACCAG
GGGTTCTCTGCTGAGGTGCAGCTAATCCACTTCAACCAAGAGCTCTACGGGAACCTCAGT
GCCGCCTCCCGGGGCCCCAATGGCCTGGCCATTCTCAGTCTCTTTGTCAATGTGGCTGGT
AACTCAAACCCATTCCTCAGCCGCCTCCTTAACCGTGACACCATCACCCGCATCTCCTAC
AAGAATGATGCCTACTTTCTTCAAGACCTGAGCCTGGAGCTCCTATTCCCCGAATCCTTT
GGCTTCATCACCTATCAGGGCTCTCTCAGCACCCCACCCTGCTCGGAGACTGTTACCTGG
ATCCTCATTGACAGGGCCCTCAATATCACCTCCCTCCAGATGCACTCCCTGAGACTCCTG
AGCCAGAATCCTCCGTCCCAGATCTTCCAGAGCCTCAGTGGGAACGGCCGGCCCCTGCAG
CCCTTGGCCCACAGGGCCTTGAGGGGCAACAGGGACCCCAGGCACCCCGAGAGGCGCTGC
CGAGGCCCCAACTACCGCCTGCATGTGGATGGTGCCCCCCACGGTCGCTGAGACTCCCCA
TCGAGGATTGCGCCTGCCTTGCCCAAGCCTCCCCACAGAGGGAGGGGAGTCACCCCCAAA
ACAAAGCTATTAAAGGGACAGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAGAAGCTCCGGGGCACCCTGTACAATACTGGTCGACACGTCTCCTTCCTGCCTGCG
CCCCGGCCCGTGGTCAATGTGTCAGGGGGGCCCCTCCTTTATAGCCACCGGCTCAGCGAA
CTGCGGCTGCTATTTGGAGCACGTGACGGAGCTGGCTCGGAACACCAGATCAATCACCAG
GGGTTCTCTGCTGAGGTGCAGCTAATCCACTTCAACCAAGAGCTCTACGGGAACCTCAGT
GCCGCCTCCCGGGGCCCCAATGGCCTGGCCATTCTCAGTCTCTTTGTCAATGTGGCTGGT
AACTCAAACCCATTCCTCAGCCGCCTCCTTAACCGTGACACCATCACCCGCATCTCCTAC
AAGAATGATGCCTACTTTCTTCAAGACCTGAGCCTGGAGCTCCTATTCCCCGAATCCTTT
GGCTTCATCACCTATCAGGGCTCTCTCAGCACCCCACCCTGCTCGGAGACTGTTACCTGG
ATCCTCATTGACAGGGCCCTCAATATCACCTCCCTCCAGATGCACTCCCTGAGACTCCTG
AGCCAGAATCCTCCGTCCCAGATCTTCCAGAGCCTCAGTGGGAACGGCCGGCCCCTGCAG
CCCTTGGCCCACAGGGCCTTGAGGGGCAACAGGGACCCCAGGCACCCCGAGAGGCGCTGC
CGAGGCCCCAACTACCGCCTGCATGTGGATGGTGCCCCCCACGGTCGCTGAGACTCCCCA
TCGAGGATTGCGCCTGCCTTGCCCAAGCCTCCCCACAGAGGGAGGGGAGTCACCCCCAAA
ACAAAGCTATTAAAGGGACAGAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|9230472|gb|AAF85895.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9230472|gb|AAF85895.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               556-695, - strand, RNAz p=0.960004

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               556-695, - strand, RNAz p=0.960004

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               8-198, gnl|bosTau2|chr18 (50539452-50539642)
               

               
               8-198, gnl|canFam2|chr1 (110558243-110558008)
               

               
               8-198, gnl|dasNov1|scaffold_96267 (5945-6177)
               

               
               8-198, gnl|fr1|chrUn (293316276-293316076)
               

               
               8-198, gnl|hg17|chr19 (53835157-53835391)
               

               
               8-198, gnl|Hg17|chr19 (53835351-53835161)
               

               
               8-198, gnl|loxAfr1|scaffold_6492 (69393-69195)
               

               
               8-198, gnl|mm7|chr7 (41878721-41878489)
               

               
               8-198, gnl|Mm7|chr7 (41878525-41878715)
               

               
               8-198, gnl|monDom2|scaffold_509 (39206-39444)
               

               
               8-198, gnl|panTro1|chr20 (51216812-51217046)
               

               
               8-198, gnl|rheMac2|chr19 (54945183-54945417)
               

               
               8-198, gnl|rn3|chr1 (96249072-96248840)
               

               
               8-198, gnl|tetNig1|chrUn_random (37606214-37606005)
               


               
               517-695, gnl|bosTau2|chr18 (50540974-50541151)
               

               
               517-695, gnl|Hg17|chr19 (53834125-53833948)
               

               
               517-695, gnl|Mm7|chr7 (41879806-41879982)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-198, gnl|bosTau2|chr18 (50539452-50539642)
               

               
               8-198, gnl|canFam2|chr1 (110558243-110558008)
               

               
               8-198, gnl|dasNov1|scaffold_96267 (5945-6177)
               

               
               8-198, gnl|fr1|chrUn (293316276-293316076)
               

               
               8-198, gnl|hg17|chr19 (53835157-53835391)
               

               
               8-198, gnl|Hg17|chr19 (53835351-53835161)
               

               
               8-198, gnl|loxAfr1|scaffold_6492 (69393-69195)
               

               
               8-198, gnl|mm7|chr7 (41878721-41878489)
               

               
               8-198, gnl|Mm7|chr7 (41878525-41878715)
               

               
               8-198, gnl|monDom2|scaffold_509 (39206-39444)
               

               
               8-198, gnl|panTro1|chr20 (51216812-51217046)
               

               
               8-198, gnl|rheMac2|chr19 (54945183-54945417)
               

               
               8-198, gnl|rn3|chr1 (96249072-96248840)
               

               
               8-198, gnl|tetNig1|chrUn_random (37606214-37606005)
               


               
               517-695, gnl|bosTau2|chr18 (50540974-50541151)
               

               
               517-695, gnl|Hg17|chr19 (53834125-53833948)
               

               
               517-695, gnl|Mm7|chr7 (41879806-41879982)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ebs (0.236602)
               

               
               fbs (0.175346)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               fbs (0.175346)
               

               
               cty (0.10408)

	8-198, gnl\|bosTau2\|chr18 (50539452-50539642)
	8-198, gnl\|canFam2\|chr1 (110558243-110558008)
	8-198, gnl\|dasNov1\|scaffold_96267 (5945-6177)
	8-198, gnl\|fr1\|chrUn (293316276-293316076)
	8-198, gnl\|hg17\|chr19 (53835157-53835391)
	8-198, gnl\|Hg17\|chr19 (53835351-53835161)
	8-198, gnl\|loxAfr1\|scaffold_6492 (69393-69195)
	8-198, gnl\|mm7\|chr7 (41878721-41878489)
	8-198, gnl\|Mm7\|chr7 (41878525-41878715)
	8-198, gnl\|monDom2\|scaffold_509 (39206-39444)
	8-198, gnl\|panTro1\|chr20 (51216812-51217046)
	8-198, gnl\|rheMac2\|chr19 (54945183-54945417)
	8-198, gnl\|rn3\|chr1 (96249072-96248840)
	8-198, gnl\|tetNig1\|chrUn_random (37606214-37606005)

	517-695, gnl\|bosTau2\|chr18 (50540974-50541151)
	517-695, gnl\|Hg17\|chr19 (53834125-53833948)
	517-695, gnl\|Mm7\|chr7 (41879806-41879982)