Non-Coding RNA Search

Ss1.1-Pig3-SRG8001H21.3

Sequence:


               
               TGTGTGCTGGGTCAGCTGCGCATCAACTCAGGGAGGGCCTACTGGGAGGTGGAGGTTGGG
GACATGCAATCTTGGGACCTGGGAATTTGTAGAGATAATGTGACCAGGAAGGGGGCATTC
ATTATGTCCCCACAGAATGGTTTCTGGGCCATTAGGCTCTATGACGGGGACTACTGGGCC
CTCACCTCCCCGGAAACTTCTCTTCCTCTAAGAGAAAGACCCCTTAAGGTGGGGATATTC
CTGAATTATGAGGCTGGAGATGTATCTTTCTACAACATGACAGATGGATCTCACATTTTC
ACCTTTCCCCAGAACACATTCTGTGGTGTCCTAAGACCACTTTTCAGACTTTGGTCCTCT
GACTCGGGCTCCCTAACCATCTGTTCAGCTGAAGGAGAATGTACTGATGTAATTCATAAG
CCTACCCTCCAGGTGAAATGATCACTTTGCCCCATAGAAGATGGCACTTCTCCCCCAACC
AGATATATAAATAGATTTTTTCCTAGTCCCTACTGGTTCATTGTCAATATGAAGCTCTGG
GACTCAGACTTAATGATTGTCCCTCATATCAATTCTCCCTCTTTTCGTTGTGTATTTTTT
CTCATTATTACCTTTTCCTATGACAGCCTCCTGTAAGTACTAGATTTCCTAGACTCCCCT
GGTGCATGTGACCAAAGGATGGTGGTGTATTAAAAGGTGAATTACAAGGATGTGTCCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGTGCTGGGTCAGCTGCGCATCAACTCAGGGAGGGCCTACTGGGAGGTGGAGGTTGGG
GACATGCAATCTTGGGACCTGGGAATTTGTAGAGATAATGTGACCAGGAAGGGGGCATTC
ATTATGTCCCCACAGAATGGTTTCTGGGCCATTAGGCTCTATGACGGGGACTACTGGGCC
CTCACCTCCCCGGAAACTTCTCTTCCTCTAAGAGAAAGACCCCTTAAGGTGGGGATATTC
CTGAATTATGAGGCTGGAGATGTATCTTTCTACAACATGACAGATGGATCTCACATTTTC
ACCTTTCCCCAGAACACATTCTGTGGTGTCCTAAGACCACTTTTCAGACTTTGGTCCTCT
GACTCGGGCTCCCTAACCATCTGTTCAGCTGAAGGAGAATGTACTGATGTAATTCATAAG
CCTACCCTCCAGGTGAAATGATCACTTTGCCCCATAGAAGATGGCACTTCTCCCCCAACC
AGATATATAAATAGATTTTTTCCTAGTCCCTACTGGTTCATTGTCAATATGAAGCTCTGG
GACTCAGACTTAATGATTGTCCCTCATATCAATTCTCCCTCTTTTCGTTGTGTATTTTTT
CTCATTATTACCTTTTCCTATGACAGCCTCCTGTAAGTACTAGATTTCCTAGACTCCCCT
GGTGCATGTGACCAAAGGATGGTGGTGTATTAAAAGGTGAATTACAAGGATGTGTCCTTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61883047|ref|XP_588679.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61883047|ref|XP_588679.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-383, gnl|bosTau2|chr12 (1728246-1728628)
               

               
               1-383, gnl|Hg17|chr6 (26616836-26617218)
               

               
               1-383, gnl|Mm7|chr13 (22825228-22824846)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-383, gnl|bosTau2|chr12 (1728246-1728628)
               

               
               1-383, gnl|Hg17|chr6 (26616836-26617218)
               

               
               1-383, gnl|Mm7|chr13 (22825228-22824846)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               jej (0.494609)
               

               
               duo (0.345602)
               

               
               nje (0.33184)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.494609)
               

               
               duo (0.345602)
               

               
               nje (0.33184)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               eje (0.0988338)

	1-383, gnl\|bosTau2\|chr12 (1728246-1728628)
	1-383, gnl\|Hg17\|chr6 (26616836-26617218)
	1-383, gnl\|Mm7\|chr13 (22825228-22824846)

	jej (0.494609)
	duo (0.345602)
	nje (0.33184)
	ill (0.175593)
	sin (0.174948)
	eje (0.0988338)