Non-Coding RNA Search

Ss1.1-Pig3-SRG8001I14.5

Sequence:


               
               ATGCCGACCACGGGAAGGGACAGAACTAGCTTAACCCTAGTCTGTCGTGTGCAGAATCGG
GGCAGAGAGTTGCTTAACCGAGCTTGTCCTGCTGCAGAGCTGTGCTGGGCACTGAAGCTG
GGACGGGCCCTGTTTGGTCCTGGAGCTGGTGGACGCCCAGAGTCCCACCTACTTGGAATT
TGATTCAGAAAACAAAGGAAAGAACACTTGCCCTCAGGAAATCGCCCGTGTCACCCAGCT
GTAACTGAACCAAACTTGGGTCTGATTGCTCACGTGCAATAAAGCAAGGAGTCCAGGTAG
CTAGTGCTCAAAAGGCCCATACTCCCGGAAGGTTTTCAGGGAAAGATTTTTAAAGACAAG
TGAGGGACAGGGGTTGTGCGGTGCATGATCATCTCGTGGACTTTCTTCTGATTGGTTGGT
GGTGAGGTAATTGAGAATCGACACCACCAACTTTCTGTGTGTGTGTATATATATATATAT
ACATAATTTACATTCGTAATGTTTGTATGCCCTGTGAGAAATTGTGGATTTGTTTAAGAA
TATTGTCAGACCTTCTACAACGTAATAACTTTTTTTAAATGAAATAGTATTCCGATGCAG
CAGAGCTGAGCGCCAGAACATCTTGCATCCCTCTGCATAAACTTGGCCCCGGGCTCTCCA
CCGGGCACCAGATGGACTCTTATTTTCTGTACAGTCAGGACCCAAAGACTATGCTTCGCA
GAGCATTCTGGGAAGTGTAATCTGGGCCTGTCGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCCGACCACGGGAAGGGACAGAACTAGCTTAACCCTAGTCTGTCGTGTGCAGAATCGG
GGCAGAGAGTTGCTTAACCGAGCTTGTCCTGCTGCAGAGCTGTGCTGGGCACTGAAGCTG
GGACGGGCCCTGTTTGGTCCTGGAGCTGGTGGACGCCCAGAGTCCCACCTACTTGGAATT
TGATTCAGAAAACAAAGGAAAGAACACTTGCCCTCAGGAAATCGCCCGTGTCACCCAGCT
GTAACTGAACCAAACTTGGGTCTGATTGCTCACGTGCAATAAAGCAAGGAGTCCAGGTAG
CTAGTGCTCAAAAGGCCCATACTCCCGGAAGGTTTTCAGGGAAAGATTTTTAAAGACAAG
TGAGGGACAGGGGTTGTGCGGTGCATGATCATCTCGTGGACTTTCTTCTGATTGGTTGGT
GGTGAGGTAATTGAGAATCGACACCACCAACTTTCTGTGTGTGTGTATATATATATATAT
ACATAATTTACATTCGTAATGTTTGTATGCCCTGTGAGAAATTGTGGATTTGTTTAAGAA
TATTGTCAGACCTTCTACAACGTAATAACTTTTTTTAAATGAAATAGTATTCCGATGCAG
CAGAGCTGAGCGCCAGAACATCTTGCATCCCTCTGCATAAACTTGGCCCCGGGCTCTCCA
CCGGGCACCAGATGGACTCTTATTTTCTGTACAGTCAGGACCCAAAGACTATGCTTCGCA
GAGCATTCTGGGAAGTGTAATCTGGGCCTGTCGACT

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               1-160, gnl|bosTau2|chr6 (49322883-49323042)
               

               
               1-160, gnl|canFam2|chr1 (113724883-113724388)
               

               
               1-160, gnl|echTel1|scaffold_289374 (38091-38587)
               

               
               1-160, gnl|hg17|chr19 (49695966-49696491)
               

               
               1-160, gnl|Hg17|chr19 (49696328-49696167)
               

               
               1-160, gnl|mm7|chr7 (20870080-20869532)
               

               
               1-160, gnl|Mm7|chr7 (20869752-20869910)
               

               
               1-160, gnl|panTro1|chr20 (46819467-46819992)
               

               
               1-160, gnl|rheMac2|chr19 (50889717-50890241)
               

               
               1-160, gnl|rn3|chr1 (79384533-79383969)
               


               
               282-457, gnl|bosTau2|chr26 (5993080-5993255)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-160, gnl|bosTau2|chr6 (49322883-49323042)
               

               
               1-160, gnl|canFam2|chr1 (113724883-113724388)
               

               
               1-160, gnl|echTel1|scaffold_289374 (38091-38587)
               

               
               1-160, gnl|hg17|chr19 (49695966-49696491)
               

               
               1-160, gnl|Hg17|chr19 (49696328-49696167)
               

               
               1-160, gnl|mm7|chr7 (20870080-20869532)
               

               
               1-160, gnl|Mm7|chr7 (20869752-20869910)
               

               
               1-160, gnl|panTro1|chr20 (46819467-46819992)
               

               
               1-160, gnl|rheMac2|chr19 (50889717-50890241)
               

               
               1-160, gnl|rn3|chr1 (79384533-79383969)
               


               
               282-457, gnl|bosTau2|chr26 (5993080-5993255)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-160, gnl\|bosTau2\|chr6 (49322883-49323042)
	1-160, gnl\|canFam2\|chr1 (113724883-113724388)
	1-160, gnl\|echTel1\|scaffold_289374 (38091-38587)
	1-160, gnl\|hg17\|chr19 (49695966-49696491)
	1-160, gnl\|Hg17\|chr19 (49696328-49696167)
	1-160, gnl\|mm7\|chr7 (20870080-20869532)
	1-160, gnl\|Mm7\|chr7 (20869752-20869910)
	1-160, gnl\|panTro1\|chr20 (46819467-46819992)
	1-160, gnl\|rheMac2\|chr19 (50889717-50890241)
	1-160, gnl\|rn3\|chr1 (79384533-79383969)

	282-457, gnl\|bosTau2\|chr26 (5993080-5993255)