Non-Coding RNA Search

Ss1.1-Pig3-SRG8001J08.3

Sequence:


               
               CCACTGCACCCCCCTCCCCAGAATATAAGCTATTGAAGAGTATTAATTTATTGGGAATGA
GCTAAGGCAGATTTCCCCAGAGAAACAAGAAGGTATAACTTTAACAAATATATATTTAAA
GAAAAAAAATATTATTGATACTATAGAAAACCATTTACCACCTGCAAGGACGCTGGAGTC
CAGCTCAAGACAAAAGCTGTTAGAGGCCCTGGCCATCTGTCCTTCCCCTCCCTCTGTCCA
GGCGTGGCCAGATCTCTGGCCCAGTAGCACAAACAGGAGGCTGGGGTCCGGGGAGGGGTC
CGTGCTCCGCCAGCACCTCCCCTCTGCTCTCTCTCCTGCCTTCTCTGCGTCTGAAGGACT
GGAAGGATGTGCCTTGCTCGCTGCTGGGCGGTGCCCTCCGCTCCTCCGGGGCTGTTGGTG
TGAGGCCGCACCTGGGCTTCAGGGGCGCCCAGTGCACAGTGTGGTGAACATGGGCACGTC
AGCCGGGTGACAGCAGGGGGTGCAGGGCGTGCATGCCAGGCTGTGTGTGGTGCGTGTGAG
GTTGTGCCCGACCTTCCCTCCCTGGGGCCCCCCACTGACCCAGCGCTGCCAGCCCACCCC
CGCAGATGCTCTGCTCGTGGTCCGAGGCCGTGTCGTGTGGTCGTTCTCGCCTTCTCTCTC
CCCCAACCCCCTGCTCCAAAAAGTACTGATCGGTCTCCTCTATCGTGTTTGCTGATGACC
CACGTGTGTTGGGCACAACTCTGACATTTCTTAAAAAAAAAAAAAAAAAGAATTAAAAAA
CGCCGAAAACCAGTGACTGTGATCCTGGCGAGTGAGAGGGGTCTGCCGAGGTGGTGTCCG
GGCATGGGGGGGGCCCCTTCCAGCGGTCACTTGTGGACCCTTCCCTGCTGGATGCGCCTG
GCCATCTCCCTGGCCTCCTCAGCGCGTGGCCCGGGGGCAGGCAGGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACTGCACCCCCCTCCCCAGAATATAAGCTATTGAAGAGTATTAATTTATTGGGAATGA
GCTAAGGCAGATTTCCCCAGAGAAACAAGAAGGTATAACTTTAACAAATATATATTTAAA
GAAAAAAAATATTATTGATACTATAGAAAACCATTTACCACCTGCAAGGACGCTGGAGTC
CAGCTCAAGACAAAAGCTGTTAGAGGCCCTGGCCATCTGTCCTTCCCCTCCCTCTGTCCA
GGCGTGGCCAGATCTCTGGCCCAGTAGCACAAACAGGAGGCTGGGGTCCGGGGAGGGGTC
CGTGCTCCGCCAGCACCTCCCCTCTGCTCTCTCTCCTGCCTTCTCTGCGTCTGAAGGACT
GGAAGGATGTGCCTTGCTCGCTGCTGGGCGGTGCCCTCCGCTCCTCCGGGGCTGTTGGTG
TGAGGCCGCACCTGGGCTTCAGGGGCGCCCAGTGCACAGTGTGGTGAACATGGGCACGTC
AGCCGGGTGACAGCAGGGGGTGCAGGGCGTGCATGCCAGGCTGTGTGTGGTGCGTGTGAG
GTTGTGCCCGACCTTCCCTCCCTGGGGCCCCCCACTGACCCAGCGCTGCCAGCCCACCCC
CGCAGATGCTCTGCTCGTGGTCCGAGGCCGTGTCGTGTGGTCGTTCTCGCCTTCTCTCTC
CCCCAACCCCCTGCTCCAAAAAGTACTGATCGGTCTCCTCTATCGTGTTTGCTGATGACC
CACGTGTGTTGGGCACAACTCTGACATTTCTTAAAAAAAAAAAAAAAAAGAATTAAAAAA
CGCCGAAAACCAGTGACTGTGATCCTGGCGAGTGAGAGGGGTCTGCCGAGGTGGTGTCCG
GGCATGGGGGGGGCCCCTTCCAGCGGTCACTTGTGGACCCTTCCCTGCTGGATGCGCCTG
GCCATCTCCCTGGCCTCCTCAGCGCGTGGCCCGGGGGCAGGCAGGTGG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               9-948, gnl|bosTau2|chr25 (5078621-5079583)
               

               
               9-948, gnl|Hg17|chr16 (2168140-2167240)
               

               
               9-948, gnl|Mm7|chr17 (22688529-22689440)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-948, gnl|bosTau2|chr25 (5078621-5079583)
               

               
               9-948, gnl|Hg17|chr16 (2168140-2167240)
               

               
               9-948, gnl|Mm7|chr17 (22688529-22689440)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fhi (0.508733)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.508733)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	9-948, gnl\|bosTau2\|chr25 (5078621-5079583)
	9-948, gnl\|Hg17\|chr16 (2168140-2167240)
	9-948, gnl\|Mm7\|chr17 (22688529-22689440)

	fhi (0.508733)
	nms (0.213858)
	fcc (0.197785)
	lnt (0.142308)
	pla (0.133672)
	ebs (0.118301)
	ecc (0.115035)