Non-Coding RNA Search

Ss1.1-Pig3-SRG8001J16.3

Sequence:


               
               TGAGACACTAATTGATGATGTGGAGTTCAGGGGATCTCGTGATTCCTGGTCTTTTTGCAA
TCAGATCGTTGACTATCTTGTATCTGGGGGACTGAGAAGGTATTGCTCCTGTTTTAATTA
TGACTTTTAAAATTGGTACATATGTCGTATGATTTGTAAAGAATTTTACTTGGTCTAATT
TATTGCATATATTAACTTCTCCTGGCAAATGACAGCTAGAAAGTTAAACTAAGATCATTT
CTAAAAAGTATACTACCTATAAATAACTGACCAGGATAGGCATCATTCAGTTCTGACTCA
GCAGATGACTAATGGACTCTCCACACTCCGCACTTTCTCCCATTTTCCTGTTGCATTAAT
AAGCCTCTTCAGTGCTTTGGCACACCTCTGTGTCAGTACAAATACAAGAAAGGGAAGATG
GTGAATTGAAAAAATGAAAGCAGAACTAGGTCTAAAGAATAAAAAGGTATCTCGGCTTAG
CACACACAGGTCTGCCAGTCCACACTGGCCTGTGCCTCGTCGTCCCTGGACATTAACAGA
TCAGTACAAACCAAGTGGTGTTTATTAATAAGGACCATTACCAAGCCCCCCCCCATAACG
TGTTATTTTTCTATGTAAATGAATTGTTTGAACTGCTTTGAAAATGAACTCTTAATATTA
AAAGGCATATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGACACTAATTGATGATGTGGAGTTCAGGGGATCTCGTGATTCCTGGTCTTTTTGCAA
TCAGATCGTTGACTATCTTGTATCTGGGGGACTGAGAAGGTATTGCTCCTGTTTTAATTA
TGACTTTTAAAATTGGTACATATGTCGTATGATTTGTAAAGAATTTTACTTGGTCTAATT
TATTGCATATATTAACTTCTCCTGGCAAATGACAGCTAGAAAGTTAAACTAAGATCATTT
CTAAAAAGTATACTACCTATAAATAACTGACCAGGATAGGCATCATTCAGTTCTGACTCA
GCAGATGACTAATGGACTCTCCACACTCCGCACTTTCTCCCATTTTCCTGTTGCATTAAT
AAGCCTCTTCAGTGCTTTGGCACACCTCTGTGTCAGTACAAATACAAGAAAGGGAAGATG
GTGAATTGAAAAAATGAAAGCAGAACTAGGTCTAAAGAATAAAAAGGTATCTCGGCTTAG
CACACACAGGTCTGCCAGTCCACACTGGCCTGTGCCTCGTCGTCCCTGGACATTAACAGA
TCAGTACAAACCAAGTGGTGTTTATTAATAAGGACCATTACCAAGCCCCCCCCCATAACG
TGTTATTTTTCTATGTAAATGAATTGTTTGAACTGCTTTGAAAATGAACTCTTAATATTA
AAAGGCATATGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               314-418, + strand, RNAz p=0.921446

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               314-418, + strand, RNAz p=0.921446

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_018211, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_018211, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-144, gnl|bosTau2|chr3 (54763756-54763613)
               

               
               1-144, gnl|canFam2|chr5 (48411250-48410964)
               

               
               1-144, gnl|dasNov1|scaffold_1547 (110385-110749)
               

               
               1-144, gnl|echTel1|scaffold_324241 (35141-35510)
               

               
               1-144, gnl|hg17|chr1 (65009999-65010395)
               

               
               1-144, gnl|Hg17|chr1 (65010182-65010335)
               

               
               1-144, gnl|loxAfr1|scaffold_20657 (4333-4714)
               

               
               1-144, gnl|mm7|chr4 (100528026-100528395)
               

               
               1-144, gnl|Mm7|chr4 (100528199-100528342)
               

               
               1-144, gnl|monDom2|scaffold_40 (9956435-9956049)
               

               
               1-144, gnl|oryCun1|scaffold_206796 (111045-111423)
               

               
               1-144, gnl|panTro1|chr1 (63350354-63350745)
               

               
               1-144, gnl|rheMac2|chr1 (67605094-67605486)
               

               
               1-144, gnl|rn3|chr5 (121808664-121809035)
               


               
               176-672, gnl|bosTau2|chr3 (54763607-54763123)
               

               
               176-672, gnl|Hg17|chr1 (65010367-65010929)
               

               
               176-672, gnl|Mm7|chr4 (100528348-100528802)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-144, gnl|bosTau2|chr3 (54763756-54763613)
               

               
               1-144, gnl|canFam2|chr5 (48411250-48410964)
               

               
               1-144, gnl|dasNov1|scaffold_1547 (110385-110749)
               

               
               1-144, gnl|echTel1|scaffold_324241 (35141-35510)
               

               
               1-144, gnl|hg17|chr1 (65009999-65010395)
               

               
               1-144, gnl|Hg17|chr1 (65010182-65010335)
               

               
               1-144, gnl|loxAfr1|scaffold_20657 (4333-4714)
               

               
               1-144, gnl|mm7|chr4 (100528026-100528395)
               

               
               1-144, gnl|Mm7|chr4 (100528199-100528342)
               

               
               1-144, gnl|monDom2|scaffold_40 (9956435-9956049)
               

               
               1-144, gnl|oryCun1|scaffold_206796 (111045-111423)
               

               
               1-144, gnl|panTro1|chr1 (63350354-63350745)
               

               
               1-144, gnl|rheMac2|chr1 (67605094-67605486)
               

               
               1-144, gnl|rn3|chr5 (121808664-121809035)
               


               
               176-672, gnl|bosTau2|chr3 (54763607-54763123)
               

               
               176-672, gnl|Hg17|chr1 (65010367-65010929)
               

               
               176-672, gnl|Mm7|chr4 (100528348-100528802)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lin (0.145603)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

	1-144, gnl\|bosTau2\|chr3 (54763756-54763613)
	1-144, gnl\|canFam2\|chr5 (48411250-48410964)
	1-144, gnl\|dasNov1\|scaffold_1547 (110385-110749)
	1-144, gnl\|echTel1\|scaffold_324241 (35141-35510)
	1-144, gnl\|hg17\|chr1 (65009999-65010395)
	1-144, gnl\|Hg17\|chr1 (65010182-65010335)
	1-144, gnl\|loxAfr1\|scaffold_20657 (4333-4714)
	1-144, gnl\|mm7\|chr4 (100528026-100528395)
	1-144, gnl\|Mm7\|chr4 (100528199-100528342)
	1-144, gnl\|monDom2\|scaffold_40 (9956435-9956049)
	1-144, gnl\|oryCun1\|scaffold_206796 (111045-111423)
	1-144, gnl\|panTro1\|chr1 (63350354-63350745)
	1-144, gnl\|rheMac2\|chr1 (67605094-67605486)
	1-144, gnl\|rn3\|chr5 (121808664-121809035)

	176-672, gnl\|bosTau2\|chr3 (54763607-54763123)
	176-672, gnl\|Hg17\|chr1 (65010367-65010929)
	176-672, gnl\|Mm7\|chr4 (100528348-100528802)