Non-Coding RNA Search

Ss1.1-Pig3-SRG8001L20.3.5

Sequence:


               
               GATGCACTGGTTGATATTTTGACTATACTGTGACCATATCACAGAGATGGATAATTCCCA
ACTTGAGAGCAGGCTGTGCTCTAAAAGTTCATTTGCAAATCTGCTGGGTAGCAGTCTTAA
AATATTCTCCCATGGAAGCTCTTCTACATGGTGGTGAAACTGAGATGTAATTAACAATGG
AGCTAAACTATGATATTTATAGAAGCAAGGACTAAATTCTCTAAGATGGTGTTCATGGAA
AAATGGACTCTGCTTGCTCACTTGGGCCAGCGGGTAGTCACCTGCCCTCCAGGGACACAG
TCCAGGCCTGGTCCTGTGGAGGGGGTGGTGACTATGACACCAAGGTCTTCTGACAGGTGA
CCCTGTGAATCTTAATTCAGGCCTGCTTACATTTTAAAACCAGTCACGCTCATCCTTCCA
TCCTAAGTGGCTTTAAATACCTGGGCACTCAGGCCCCTCACACATAAACCCCTCTGACCA
CAGAAAGAAGCACCCTCTGATGCTCTGTCCCCTTGTCTTCTGGAGAGCTTATCACAGAGT
ACCTGGCTGTCCCCTTCTATCCCAGAATGACTCGTCATCTCCCCGCAAAACATGCACATG
CCTCCCCATGCCTCCCACTGCCCAGCGGGCTGAGTTGCCCTGAATGTCTCCCACTCTCAG
CCCCCCTAAAATGGATGACTTGGGGGAGACGTGGAGGCTGACGGCTGAGACTGCTGTCAG
ATATGATCTAGAAAAACAGAGCTCTGGGATCAGGAACCACACAGGTACCATGGTTGCCAT
GGCAACCAGCTGCTAGTTTGAATGAAGACAGCAGTCAGCCGTCGTGGCCGTGACAAGGCC
TCTGTCTCCAGGTGCGGTGCCCTGCCATCTCCTGAATGCATGGATTTGCTCTACCTCCAG
GCATGAAACACCCAGGAAGCCACTTCTCCGTAGCTTCCATAGCAAAGTGTGCAGACCCAA
GACCCTGAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGCACTGGTTGATATTTTGACTATACTGTGACCATATCACAGAGATGGATAATTCCCA
ACTTGAGAGCAGGCTGTGCTCTAAAAGTTCATTTGCAAATCTGCTGGGTAGCAGTCTTAA
AATATTCTCCCATGGAAGCTCTTCTACATGGTGGTGAAACTGAGATGTAATTAACAATGG
AGCTAAACTATGATATTTATAGAAGCAAGGACTAAATTCTCTAAGATGGTGTTCATGGAA
AAATGGACTCTGCTTGCTCACTTGGGCCAGCGGGTAGTCACCTGCCCTCCAGGGACACAG
TCCAGGCCTGGTCCTGTGGAGGGGGTGGTGACTATGACACCAAGGTCTTCTGACAGGTGA
CCCTGTGAATCTTAATTCAGGCCTGCTTACATTTTAAAACCAGTCACGCTCATCCTTCCA
TCCTAAGTGGCTTTAAATACCTGGGCACTCAGGCCCCTCACACATAAACCCCTCTGACCA
CAGAAAGAAGCACCCTCTGATGCTCTGTCCCCTTGTCTTCTGGAGAGCTTATCACAGAGT
ACCTGGCTGTCCCCTTCTATCCCAGAATGACTCGTCATCTCCCCGCAAAACATGCACATG
CCTCCCCATGCCTCCCACTGCCCAGCGGGCTGAGTTGCCCTGAATGTCTCCCACTCTCAG
CCCCCCTAAAATGGATGACTTGGGGGAGACGTGGAGGCTGACGGCTGAGACTGCTGTCAG
ATATGATCTAGAAAAACAGAGCTCTGGGATCAGGAACCACACAGGTACCATGGTTGCCAT
GGCAACCAGCTGCTAGTTTGAATGAAGACAGCAGTCAGCCGTCGTGGCCGTGACAAGGCC
TCTGTCTCCAGGTGCGGTGCCCTGCCATCTCCTGAATGCATGGATTTGCTCTACCTCCAG
GCATGAAACACCCAGGAAGCCACTTCTCCGTAGCTTCCATAGCAAAGTGTGCAGACCCAA
GACCCTGAAAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               274-462, - strand, RNAz p=0.9985

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               274-462, - strand, RNAz p=0.9985

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               281-358, + strand, RNAmicro p=0.913061

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               281-358, + strand, RNAmicro p=0.913061

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-587, gnl|bosTau2|chr16 (44799109-44798544)
               

               
               3-587, gnl|Hg17|chr1 (171859996-171859376)
               

               
               3-587, gnl|Mm7|chr1 (160038979-160039511)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-587, gnl|bosTau2|chr16 (44799109-44798544)
               

               
               3-587, gnl|Hg17|chr1 (171859996-171859376)
               

               
               3-587, gnl|Mm7|chr1 (160038979-160039511)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mgp (0.230681)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               pla (0.133672)

	3-587, gnl\|bosTau2\|chr16 (44799109-44798544)
	3-587, gnl\|Hg17\|chr1 (171859996-171859376)
	3-587, gnl\|Mm7\|chr1 (160038979-160039511)