Non-Coding RNA Search

Ss1.1-Pig3-SRG8001N09.3

Sequence:


               
               TAAGACACCTTGGTATTGTTTATCTTCTTGGCAACTTAGATGGTAATACCTTCCTGCCTG
GAGTGGGAGAAGCCCAACCCAGAACAGTGCAGGCAGGAGCGGCGAGGCTGCAAGCTTGAT
TCTGGAGGAATCCAAGGTACCTCCAGGTGACGATCAGGTTTACCGCATGACTTTGATCCA
CATTTCTGACCTCCTCCATTTCTCTGAGTTTAACAGACTTCCCAGGAACTGGAGAACATG
AAAAGGTACCCTGGCTTCTCCTTGCCTTCTTCTCTTCCCTTCTAGAATAACTCTCCCTTC
TACCAAGTGTACCCAAACCTGCAGGCTGAGTTCAGTTCCTCGGGCTTCATCCACATGGCT
GATTGCCGGCAGACCACAGCCCCTTATGTTATCTGCAGTCTCACCATAATCGGTGCCAAA
AAGACAGTCGTCTCTTAGTGGAGCATAGCTGAGTTTTGCTTCTTGTTATTTTTACCTGTA
GTTCATTTGTGACTTCAGGAAGCTTGAAACAGAGGAGAGAAACCAAAAAAGTGTGATTAT
GGCAGCCTGACTTCAGATGGAACTTCATGCATTATATCCAGAAACCTCTGTTGGAAATAG
AGTACCTATGATCTAAAATTTCCTGGAGGCAGATGACATGTAAAATATATGCTCTCCAAC
CCACCCAGCTGGCTCTCTTAGCTTCTGATTGGCAGTGCGCGTGTTAAGGTTCAGTGCCGT
GAACAGCATTATAAAGCATCACCTCCTTTCTCTCTCTCTCTCTCTCTCTCCCTTTTTTGG
ACGCTGATGGAAAAGACCAACAAGGAGGGTTAGATCTCTGGGTACCAAGGACACTAATCC
CTTCCCAAATCAGTGATCACTTAAGCCCAATGCAGGCTGTTCTGAGGGATGTCCATTGGA
CTCCAGCTAGGGGGCAGGCCTGGCAACAAGTGTGAGCCTCCCTGAGAGCTTTTGTTTGGC
TCAGCCTTTGTTCTCTAGACTCTTGAGTACTGACTGCTTTGACTTTTGTGATTATGTTAT
TATGGTGATGTGTAGTCAATGTACCAATATGTTCACGATCTAGGATCATGAAATATAGTG
CGTTTTGGTTTTTTTTAACTGTTCAGAAAAAAGTAACTTAAATTACAAATATAAGATTAA
AGTGAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGACACCTTGGTATTGTTTATCTTCTTGGCAACTTAGATGGTAATACCTTCCTGCCTG
GAGTGGGAGAAGCCCAACCCAGAACAGTGCAGGCAGGAGCGGCGAGGCTGCAAGCTTGAT
TCTGGAGGAATCCAAGGTACCTCCAGGTGACGATCAGGTTTACCGCATGACTTTGATCCA
CATTTCTGACCTCCTCCATTTCTCTGAGTTTAACAGACTTCCCAGGAACTGGAGAACATG
AAAAGGTACCCTGGCTTCTCCTTGCCTTCTTCTCTTCCCTTCTAGAATAACTCTCCCTTC
TACCAAGTGTACCCAAACCTGCAGGCTGAGTTCAGTTCCTCGGGCTTCATCCACATGGCT
GATTGCCGGCAGACCACAGCCCCTTATGTTATCTGCAGTCTCACCATAATCGGTGCCAAA
AAGACAGTCGTCTCTTAGTGGAGCATAGCTGAGTTTTGCTTCTTGTTATTTTTACCTGTA
GTTCATTTGTGACTTCAGGAAGCTTGAAACAGAGGAGAGAAACCAAAAAAGTGTGATTAT
GGCAGCCTGACTTCAGATGGAACTTCATGCATTATATCCAGAAACCTCTGTTGGAAATAG
AGTACCTATGATCTAAAATTTCCTGGAGGCAGATGACATGTAAAATATATGCTCTCCAAC
CCACCCAGCTGGCTCTCTTAGCTTCTGATTGGCAGTGCGCGTGTTAAGGTTCAGTGCCGT
GAACAGCATTATAAAGCATCACCTCCTTTCTCTCTCTCTCTCTCTCTCTCCCTTTTTTGG
ACGCTGATGGAAAAGACCAACAAGGAGGGTTAGATCTCTGGGTACCAAGGACACTAATCC
CTTCCCAAATCAGTGATCACTTAAGCCCAATGCAGGCTGTTCTGAGGGATGTCCATTGGA
CTCCAGCTAGGGGGCAGGCCTGGCAACAAGTGTGAGCCTCCCTGAGAGCTTTTGTTTGGC
TCAGCCTTTGTTCTCTAGACTCTTGAGTACTGACTGCTTTGACTTTTGTGATTATGTTAT
TATGGTGATGTGTAGTCAATGTACCAATATGTTCACGATCTAGGATCATGAAATATAGTG
CGTTTTGGTTTTTTTTAACTGTTCAGAAAAAAGTAACTTAAATTACAAATATAAGATTAA
AGTGAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               180-296, - strand, RNAz p=0.887967

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               180-296, - strand, RNAz p=0.887967

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-1146, gnl|bosTau2|chr26 (13913788-13914923)
               

               
               5-1146, gnl|Mm7|chr19 (45429214-45430238)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1146, gnl|bosTau2|chr26 (13913788-13914923)
               

               
               5-1146, gnl|Mm7|chr19 (45429214-45430238)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cbe (0.478469)
               

               
               sag (0.182715)
               

               
               isp (0.150376)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               sag (0.182715)
               

               
               isp (0.150376)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	5-1146, gnl\|bosTau2\|chr26 (13913788-13914923)
	5-1146, gnl\|Mm7\|chr19 (45429214-45430238)

	cbe (0.478469)
	sag (0.182715)
	isp (0.150376)
	cst (0.140036)
	lyg (0.133103)
	nmm (0.132802)
	ret (0.128733)
	tra (0.123092)
	ebs (0.118301)
	ecc (0.115035)
	nbm (0.0993246)
	ldo (0.0970026)