Ss1.1-Pig3-SRG8001N10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCGGGCTTTTCTTTGGCTTTATTGAGTAAACAATTTTCTAGAAGAGAGGGAGGGATGGG GACAGTCATTCTTCTAATCAGATTTCTCCCAGCACCTGCAGGGGGTGGAATTCCAAGTTC CAGGGGGTCCAGATCAGCTATTCATCAGTATCCCCAGAAGTGAATCCGAAAGGAGTTCAT GAAGTCTGGAGATTTGGCCATTGCGTGCTCAAACTCGGAGAAAGACAGCATGTTGTCATT GTCCAGGTCTGACTCATCCAGCACCCCGCAGCCCCGGGCACACACGCGGCTGGTGAGGTC AGTGAGCAGGTCCTCGGACATGTCGTTGCTGTTGAGCAGCCGAAGGATGATCCTTTGCAG GTCCTCCTCATCAATGAAGCCATTCTCGTTAAAATCGTAGATGCGGAAGGCATACTCGAT CTTCATGCTGGGGCAGGCCTGCTCGCTGAACACAGATGCCATGCCCAGCACATCCTCAAA GCAGAACACGTCGTTGTGGGAGAACACTCTGCAGATTCGGTCTCTGAAAGGGTTGACCTG CTGGTGGGCGCCGCGGTCTTCGACGCGCTGGAGTCGGAGCCGGAGATGATCGAGCGGCAG CGGCTGGAGCTGCGGCAGCAGGAGCTGCGGGCGCGCTACAACCTCAGCCAGGGCGGCTAC GAGGAGCTCGAGCGCGTCGTGATGCGCCTCAAGCCGCACAAGGCCGGCGTGCAGTGGCGC CCGCCGGCTCATTATAATTCGCCATCACCGTCATCACCACCATCGGTAACTACTCGCCGG GCGGGGACCCGGGGGCTGGGCGCCCGGTTCTAGGGGAGTCGGGAGCCGGCTGGGGTTGGG GAGGTTCCCCTGGAGAAGGGGTAGGCGCCGAACTCCGCGCTCCCAGAAACCCGAGTTCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCGGGCTTTTCTTTGGCTTTATTGAGTAAACAATTTTCTAGAAGAGAGGGAGGGATGGG GACAGTCATTCTTCTAATCAGATTTCTCCCAGCACCTGCAGGGGGTGGAATTCCAAGTTC CAGGGGGTCCAGATCAGCTATTCATCAGTATCCCCAGAAGTGAATCCGAAAGGAGTTCAT GAAGTCTGGAGATTTGGCCATTGCGTGCTCAAACTCGGAGAAAGACAGCATGTTGTCATT GTCCAGGTCTGACTCATCCAGCACCCCGCAGCCCCGGGCACACACGCGGCTGGTGAGGTC AGTGAGCAGGTCCTCGGACATGTCGTTGCTGTTGAGCAGCCGAAGGATGATCCTTTGCAG GTCCTCCTCATCAATGAAGCCATTCTCGTTAAAATCGTAGATGCGGAAGGCATACTCGAT CTTCATGCTGGGGCAGGCCTGCTCGCTGAACACAGATGCCATGCCCAGCACATCCTCAAA GCAGAACACGTCGTTGTGGGAGAACACTCTGCAGATTCGGTCTCTGAAAGGGTTGACCTG CTGGTGGGCGCCGCGGTCTTCGACGCGCTGGAGTCGGAGCCGGAGATGATCGAGCGGCAG CGGCTGGAGCTGCGGCAGCAGGAGCTGCGGGCGCGCTACAACCTCAGCCAGGGCGGCTAC GAGGAGCTCGAGCGCGTCGTGATGCGCCTCAAGCCGCACAAGGCCGGCGTGCAGTGGCGC CCGCCGGCTCATTATAATTCGCCATCACCGTCATCACCACCATCGGTAACTACTCGCCGG GCGGGGACCCGGGGGCTGGGCGCCCGGTTCTAGGGGAGTCGGGAGCCGGCTGGGGTTGGG GAGGTTCCCCTGGAGAAGGGGTAGGCGCCGAACTCCGCGCTCCCAGAAACCCGAGTTCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 786-900, + strand, RNAz p=0.719493 | |
| 786-900, + strand, RNAz p=0.736091 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 786-900, + strand, RNAz p=0.719493 | |
| 786-900, + strand, RNAz p=0.736091 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 5-126, gnl|bosTau2|chr11 (55024900-55025023) | |
| 5-126, gnl|canFam2|chr17 (23615777-23616054) | |
| 5-126, gnl|dasNov1|scaffold_43239 (42034-41760) | |
| 5-126, gnl|hg17|chr2 (26715672-26715942) | |
| 5-126, gnl|Hg17|chr2 (26715733-26715842) | |
| 5-126, gnl|loxAfr1|scaffold_5160 (29051-29320) | |
| 5-126, gnl|mm7|chr5 (29518072-29518316) | |
| 5-126, gnl|Mm7|chr5 (29518114-29518219) | |
| 5-126, gnl|oryCun1|scaffold_129659 (179-403) | |
| 5-126, gnl|panTro1|chr12 (27632114-27632389) | |
| 5-126, gnl|rheMac2|chr13 (26524209-26524484) | |
| 5-126, gnl|rn3|chr6 (25890423-25890164) | |
| 258-396, gnl|bosTau2|chr11 (55027489-55027627) | |
| 258-396, gnl|canFam2|chr17 (23618311-23618619) | |
| 258-396, gnl|dasNov1|scaffold_124870 (736-1082) | |
| 258-396, gnl|hg17|chr2 (26718233-26718573) | |
| 258-396, gnl|Hg17|chr2 (26718276-26718418) | |
| 258-396, gnl|loxAfr1|scaffold_5160 (32674-33004) | |
| 258-396, gnl|mm7|chr5 (29520951-29521211) | |
| 258-396, gnl|Mm7|chr5 (29520981-29521118) | |
| 258-396, gnl|panTro1|chr12 (27634681-27635021) | |
| 258-396, gnl|rheMac2|chr13 (26526845-26527185) | |
| 258-396, gnl|rn3|chr6 (25887927-25887649) | |
| 536-900, gnl|bosTau2|chr11 (55127490-55127862) | |
| 536-900, gnl|canFam2|chr17 (23713638-23713899) | |
| 536-900, gnl|danRer3|chrUn (183342259-183342511) | |
| 536-900, gnl|dasNov1|scaffold_38363 (1117-840) | |
| 536-900, gnl|echTel1|scaffold_260063 (2644-2905) | |
| 536-900, gnl|fr1|chrUn (100715177-100714919) | |
| 536-900, gnl|galGal2|chr20 (5066601-5066349) | |
| 536-900, gnl|hg17|chr2 (26827430-26827691) | |
| 536-900, gnl|Hg17|chr2 (26827447-26827822) | |
| 536-900, gnl|loxAfr1|scaffold_40827 (23676-23937) | |
| 536-900, gnl|mm7|chr5 (29620869-29621141) | |
| 536-900, gnl|Mm7|chr5 (29620886-29621248) | |
| 536-900, gnl|monDom2|scaffold_1 (149823492-149823233) | |
| 536-900, gnl|oryCun1|scaffold_107808 (10537-10799) | |
| 536-900, gnl|panTro1|chr12 (27746789-27747050) | |
| 536-900, gnl|rheMac2|chr13 (26635391-26635652) | |
| 536-900, gnl|rn3|chr6 (25784968-25784696) | |
| 536-900, gnl|tetNig1|chr14 (4671543-4671804) | |
| 536-900, gnl|xenTro1|scaffold_161 (1855932-1856193) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-126, gnl|bosTau2|chr11 (55024900-55025023) | |
| 5-126, gnl|canFam2|chr17 (23615777-23616054) | |
| 5-126, gnl|dasNov1|scaffold_43239 (42034-41760) | |
| 5-126, gnl|hg17|chr2 (26715672-26715942) | |
| 5-126, gnl|Hg17|chr2 (26715733-26715842) | |
| 5-126, gnl|loxAfr1|scaffold_5160 (29051-29320) | |
| 5-126, gnl|mm7|chr5 (29518072-29518316) | |
| 5-126, gnl|Mm7|chr5 (29518114-29518219) | |
| 5-126, gnl|oryCun1|scaffold_129659 (179-403) | |
| 5-126, gnl|panTro1|chr12 (27632114-27632389) | |
| 5-126, gnl|rheMac2|chr13 (26524209-26524484) | |
| 5-126, gnl|rn3|chr6 (25890423-25890164) | |
| 258-396, gnl|bosTau2|chr11 (55027489-55027627) | |
| 258-396, gnl|canFam2|chr17 (23618311-23618619) | |
| 258-396, gnl|dasNov1|scaffold_124870 (736-1082) | |
| 258-396, gnl|hg17|chr2 (26718233-26718573) | |
| 258-396, gnl|Hg17|chr2 (26718276-26718418) | |
| 258-396, gnl|loxAfr1|scaffold_5160 (32674-33004) | |
| 258-396, gnl|mm7|chr5 (29520951-29521211) | |
| 258-396, gnl|Mm7|chr5 (29520981-29521118) | |
| 258-396, gnl|panTro1|chr12 (27634681-27635021) | |
| 258-396, gnl|rheMac2|chr13 (26526845-26527185) | |
| 258-396, gnl|rn3|chr6 (25887927-25887649) | |
| 536-900, gnl|bosTau2|chr11 (55127490-55127862) | |
| 536-900, gnl|canFam2|chr17 (23713638-23713899) | |
| 536-900, gnl|danRer3|chrUn (183342259-183342511) | |
| 536-900, gnl|dasNov1|scaffold_38363 (1117-840) | |
| 536-900, gnl|echTel1|scaffold_260063 (2644-2905) | |
| 536-900, gnl|fr1|chrUn (100715177-100714919) | |
| 536-900, gnl|galGal2|chr20 (5066601-5066349) | |
| 536-900, gnl|hg17|chr2 (26827430-26827691) | |
| 536-900, gnl|Hg17|chr2 (26827447-26827822) | |
| 536-900, gnl|loxAfr1|scaffold_40827 (23676-23937) | |
| 536-900, gnl|mm7|chr5 (29620869-29621141) | |
| 536-900, gnl|Mm7|chr5 (29620886-29621248) | |
| 536-900, gnl|monDom2|scaffold_1 (149823492-149823233) | |
| 536-900, gnl|oryCun1|scaffold_107808 (10537-10799) | |
| 536-900, gnl|panTro1|chr12 (27746789-27747050) | |
| 536-900, gnl|rheMac2|chr13 (26635391-26635652) | |
| 536-900, gnl|rn3|chr6 (25784968-25784696) | |
| 536-900, gnl|tetNig1|chr14 (4671543-4671804) | |
| 536-900, gnl|xenTro1|scaffold_161 (1855932-1856193) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.136314) | |
| sug (0.127291) |