Non-Coding RNA Search

Ss1.1-Pig3-SRG8001N16.3

Sequence:


               
               TCTCCTTCATTCCCAGTGCCCTAAGCACTAAGTCATTACACGTGAGCTCCAAGGTCACTC
ACTCCATCCCATCCCCTCCTGTTAGTGCAGCCCAAAGTCAGAAATTAGCTTCCCCCAAAT
GACACAGCTAATTAGGAGCAGACCCCACTGCCTCCGCCCCTGTACTCCTCCCCACCCCCG
TTAGAGTTTATCGTATGGTCATCATGTTTACAGCGTGCCAGCCAGCCCTAAGGTTGGCTG
GGGGTTGCTCAGGCGTCCAAGAAAAGTGGGAGATGCTGCCACCTGGTGACAGCTGGATAT
GTGGATAGTGAACAGGGATTGCCGTACCCCTCTTCACCCCTCGCCCCCTCACCATCACCC
TGACTCACAGCACAGCACAAACCCTGCAACCCAAAAACGATGATTAATCTTGAAGCAAGA
AGGGTGCACGCCAGTCCCTCTCAGACATGGCCAGGGGATGCCAGGCCTTGGACCCCTGGA
CTCCTGGCCCTGCCCAGGACAGGAGGGCTTTTTCCTAGAGCTACTGAGCTGCTTTGTGAC
GTTGGAGGGTACTGCCGGCAGCAGGTAGAGGAGGGAGGGGCCTGTGGCTCTGACCCATCT
GGAGGAAGACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCCTTCATTCCCAGTGCCCTAAGCACTAAGTCATTACACGTGAGCTCCAAGGTCACTC
ACTCCATCCCATCCCCTCCTGTTAGTGCAGCCCAAAGTCAGAAATTAGCTTCCCCCAAAT
GACACAGCTAATTAGGAGCAGACCCCACTGCCTCCGCCCCTGTACTCCTCCCCACCCCCG
TTAGAGTTTATCGTATGGTCATCATGTTTACAGCGTGCCAGCCAGCCCTAAGGTTGGCTG
GGGGTTGCTCAGGCGTCCAAGAAAAGTGGGAGATGCTGCCACCTGGTGACAGCTGGATAT
GTGGATAGTGAACAGGGATTGCCGTACCCCTCTTCACCCCTCGCCCCCTCACCATCACCC
TGACTCACAGCACAGCACAAACCCTGCAACCCAAAAACGATGATTAATCTTGAAGCAAGA
AGGGTGCACGCCAGTCCCTCTCAGACATGGCCAGGGGATGCCAGGCCTTGGACCCCTGGA
CTCCTGGCCCTGCCCAGGACAGGAGGGCTTTTTCCTAGAGCTACTGAGCTGCTTTGTGAC
GTTGGAGGGTACTGCCGGCAGCAGGTAGAGGAGGGAGGGGCCTGTGGCTCTGACCCATCT
GGAGGAAGACCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               182-300, - strand, RNAz p=0.795314
               

               
               418-612, + strand, RNAz p=0.79515

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               182-300, - strand, RNAz p=0.795314
               

               
               418-612, + strand, RNAz p=0.79515

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               524-620, + strand, RNAmicro p=0.999883
               

               
               484-590, - strand, RNAmicro p=0.981906

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               524-620, + strand, RNAmicro p=0.999883
               

               
               484-590, - strand, RNAmicro p=0.981906

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014631, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014631, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-127, gnl|bosTau2|chr26 (15826204-15826328)
               

               
               1-127, gnl|Hg17|chr10 (105349006-105348868)
               

               
               1-127, gnl|Mm7|chr19 (47165276-47165138)
               


               
               167-612, gnl|bosTau2|chr26 (15826340-15826787)
               

               
               167-612, gnl|Hg17|chr10 (105348856-105348392)
               

               
               167-612, gnl|Mm7|chr19 (47165100-47164695)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-127, gnl|bosTau2|chr26 (15826204-15826328)
               

               
               1-127, gnl|Hg17|chr10 (105349006-105348868)
               

               
               1-127, gnl|Mm7|chr19 (47165276-47165138)
               


               
               167-612, gnl|bosTau2|chr26 (15826340-15826787)
               

               
               167-612, gnl|Hg17|chr10 (105348856-105348392)
               

               
               167-612, gnl|Mm7|chr19 (47165100-47164695)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               csp (0.161186)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               clu (0.119646)

	182-300, - strand, RNAz p=0.795314
	418-612, + strand, RNAz p=0.79515

	524-620, + strand, RNAmicro p=0.999883
	484-590, - strand, RNAmicro p=0.981906

	1-127, gnl\|bosTau2\|chr26 (15826204-15826328)
	1-127, gnl\|Hg17\|chr10 (105349006-105348868)
	1-127, gnl\|Mm7\|chr19 (47165276-47165138)

	167-612, gnl\|bosTau2\|chr26 (15826340-15826787)
	167-612, gnl\|Hg17\|chr10 (105348856-105348392)
	167-612, gnl\|Mm7\|chr19 (47165100-47164695)