Ss1.1-Pig3-SRG8002A04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCCGGCCCGGAGTCTTAGAACCAGGGCCCGCAAGGGTCCCCGCGCGGCTGCCGCGATGC ATAAATACGAGAAACTGGAGAAGATTGGGGAAGGCACCTATGGAACAGTGTTCAAGGCCA AAAACCGGGAGACTCATGAGATTGTGGCTCTGAAACGGGTGAGGCTGGATGACGATGATG AGGGAGTGCCAAGTTCTGCCCTTCGGGAAATCTGCCTCCTCAAAGAGCTGAAGCACAAGA ACATTGTCAGGCTCCATGATGTCCTGCATAGCGACAAGAAGCTGACGTTGGTTTTCGAGT TCTGTGACCAGGATCTTAAGAAGTATTTCGACAGCTGCAATGGTGACCTAGATCCTGAAA TTGTGAAGTCATTCCTTTTCCAGCTGCTAAAAGGCCTGGGATTCTGTCACAGCCGAAATG TGCTACACAGGGACCTGAAGCCTCAGAACCTGCTCATAAACAGGAACGGGGAGCTGAAGT TGGCAGATTTTGGTTTGGCTCGAGCCTTTGGCATCCCTGTTCGCTGTTACTCGGCTGAGG TGGTCACGCTGTGGTACCGCCCGCCGGATGTCCTCTTTGGGGCCAAGCTCTACTCCACAT CCATCGACATGTGGTCGGCCGGCTGCATCTTCGCAGAGCTGGCCAATGCCGGCCGGCCTC TCTTTCCCGGCAACGACGTTGACGACCAGCTCAAAAGGATCTTCCGACTGCTGGGGACAC CGACCGAGGAGCAGTGGCCCGCCATGACCAAGCTGCCAGACTATAAGCCCTACCCGATGT ACCCAGCCACAACGTCCCTGGTGAACGTCGTGCCCAAGCTCAATGCCACAGGGAGGGACC TGCTGCAGAACCTCCTGAAGTGTAACCCGGTCCAGCGCATCTCCGCAGAAGAGGCCTTGC AGCACCCCTACTTCTCTGACTTCTGCCCCCCCTAGGCTGCCAGGCTGGGGCCTGGCCTAT TTAAGCCCCTCCAGGGAGGGGAGGACGGGCGGGGACTCACGGTGAGCCGAGCTCCAGCTG TGCTGGGCCTGGCCAGGGTGGAGGTGCCCTCACCTGTGTTCTTCATGCCCCCTGCGGACT TTATTTAATTTCATAAATTGGCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCCGGCCCGGAGTCTTAGAACCAGGGCCCGCAAGGGTCCCCGCGCGGCTGCCGCGATGC ATAAATACGAGAAACTGGAGAAGATTGGGGAAGGCACCTATGGAACAGTGTTCAAGGCCA AAAACCGGGAGACTCATGAGATTGTGGCTCTGAAACGGGTGAGGCTGGATGACGATGATG AGGGAGTGCCAAGTTCTGCCCTTCGGGAAATCTGCCTCCTCAAAGAGCTGAAGCACAAGA ACATTGTCAGGCTCCATGATGTCCTGCATAGCGACAAGAAGCTGACGTTGGTTTTCGAGT TCTGTGACCAGGATCTTAAGAAGTATTTCGACAGCTGCAATGGTGACCTAGATCCTGAAA TTGTGAAGTCATTCCTTTTCCAGCTGCTAAAAGGCCTGGGATTCTGTCACAGCCGAAATG TGCTACACAGGGACCTGAAGCCTCAGAACCTGCTCATAAACAGGAACGGGGAGCTGAAGT TGGCAGATTTTGGTTTGGCTCGAGCCTTTGGCATCCCTGTTCGCTGTTACTCGGCTGAGG TGGTCACGCTGTGGTACCGCCCGCCGGATGTCCTCTTTGGGGCCAAGCTCTACTCCACAT CCATCGACATGTGGTCGGCCGGCTGCATCTTCGCAGAGCTGGCCAATGCCGGCCGGCCTC TCTTTCCCGGCAACGACGTTGACGACCAGCTCAAAAGGATCTTCCGACTGCTGGGGACAC CGACCGAGGAGCAGTGGCCCGCCATGACCAAGCTGCCAGACTATAAGCCCTACCCGATGT ACCCAGCCACAACGTCCCTGGTGAACGTCGTGCCCAAGCTCAATGCCACAGGGAGGGACC TGCTGCAGAACCTCCTGAAGTGTAACCCGGTCCAGCGCATCTCCGCAGAAGAGGCCTTGC AGCACCCCTACTTCTCTGACTTCTGCCCCCCCTAGGCTGCCAGGCTGGGGCCTGGCCTAT TTAAGCCCCTCCAGGGAGGGGAGGACGGGCGGGGACTCACGGTGAGCCGAGCTCCAGCTG TGCTGGGCCTGGCCAGGGTGGAGGTGCCCTCACCTGTGTTCTTCATGCCCCCTGCGGACT TTATTTAATTTCATAAATTGGCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 372-490, - strand, RNAz p=0.60151 | |
| 925-1104, - strand, RNAz p=0.988625 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 372-490, - strand, RNAz p=0.60151 | |
| 925-1104, - strand, RNAz p=0.988625 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 63-769, gnl|bosTau2|chr5 (32366493-32367197) | |
| 63-769, gnl|Hg17|chr12 (54647066-54651219) | |
| 63-769, gnl|Mm7|chr10 (128206589-128201319) | |
| 372-507, gnl|bosTau2|chr16 (1386935-1387071) | |
| 372-507, gnl|canFam2|chr38 (4998035-4998162) | |
| 372-507, gnl|danRer3|chr11 (41216115-41215988) | |
| 372-507, gnl|dasNov1|scaffold_46068 (10947-11074) | |
| 372-507, gnl|echTel1|scaffold_297484 (3706-3833) | |
| 372-507, gnl|fr1|chrUn (172962443-172962570) | |
| 372-507, gnl|galGal2|chr26 (767277-767404) | |
| 372-507, gnl|hg17|chr1 (202228578-202228705) | |
| 372-507, gnl|Hg17|chr1 (202228582-202228716) | |
| 372-507, gnl|loxAfr1|scaffold_79516 (4221-4348) | |
| 372-507, gnl|mm7|chr1 (132013442-132013315) | |
| 372-507, gnl|Mm7|chr1 (132013436-132013295) | |
| 372-507, gnl|monDom2|scaffold_13 (7240461-7240588) | |
| 372-507, gnl|oryCun1|scaffold_211752 (21689-21816) | |
| 372-507, gnl|panTro1|chr1 (185186569-185186696) | |
| 372-507, gnl|rheMac2|chr1 (164887124-164886997) | |
| 372-507, gnl|rn3|chr13 (45014017-45013890) | |
| 372-507, gnl|tetNig1|chr11 (10596164-10596291) | |
| 372-507, gnl|xenTro1|scaffold_19 (3631352-3631479) | |
| 846-1104, gnl|bosTau2|chr4 (64540286-64540545) | |
| 846-1104, gnl|Hg17|chr7 (150188833-150188560) | |
| 846-1104, gnl|Mm7|chr5 (23459958-23459688) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 63-769, gnl|bosTau2|chr5 (32366493-32367197) | |
| 63-769, gnl|Hg17|chr12 (54647066-54651219) | |
| 63-769, gnl|Mm7|chr10 (128206589-128201319) | |
| 372-507, gnl|bosTau2|chr16 (1386935-1387071) | |
| 372-507, gnl|canFam2|chr38 (4998035-4998162) | |
| 372-507, gnl|danRer3|chr11 (41216115-41215988) | |
| 372-507, gnl|dasNov1|scaffold_46068 (10947-11074) | |
| 372-507, gnl|echTel1|scaffold_297484 (3706-3833) | |
| 372-507, gnl|fr1|chrUn (172962443-172962570) | |
| 372-507, gnl|galGal2|chr26 (767277-767404) | |
| 372-507, gnl|hg17|chr1 (202228578-202228705) | |
| 372-507, gnl|Hg17|chr1 (202228582-202228716) | |
| 372-507, gnl|loxAfr1|scaffold_79516 (4221-4348) | |
| 372-507, gnl|mm7|chr1 (132013442-132013315) | |
| 372-507, gnl|Mm7|chr1 (132013436-132013295) | |
| 372-507, gnl|monDom2|scaffold_13 (7240461-7240588) | |
| 372-507, gnl|oryCun1|scaffold_211752 (21689-21816) | |
| 372-507, gnl|panTro1|chr1 (185186569-185186696) | |
| 372-507, gnl|rheMac2|chr1 (164887124-164886997) | |
| 372-507, gnl|rn3|chr13 (45014017-45013890) | |
| 372-507, gnl|tetNig1|chr11 (10596164-10596291) | |
| 372-507, gnl|xenTro1|scaffold_19 (3631352-3631479) | |
| 846-1104, gnl|bosTau2|chr4 (64540286-64540545) | |
| 846-1104, gnl|Hg17|chr7 (150188833-150188560) | |
| 846-1104, gnl|Mm7|chr5 (23459958-23459688) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| ece (0.45861) | |
| fce (0.271592) | |
| ecc (0.23007) | |
| fcc (0.197785) | |
| fhi (0.169578) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| med (0.116252) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.45861) | |
| fce (0.271592) | |
| ecc (0.23007) | |
| fcc (0.197785) | |
| fhi (0.169578) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| med (0.116252) |