Non-Coding RNA Search

Ss1.1-Pig3-SRG8002B07.5

Sequence:


               
               TGAAGATGATTCTGAACCTTATCCTAAGAAACACGCTCGAGTACAGTGGTTTGTCCGATT
CTGTGAAATCCCAGTCCATAAACAGCATTTGCTGGGCCGGAAGCCTGATGCACAAGAGAT
ATTCTGGTATGATAATTGTGCCTACAACAACAACGTTAACACTGAAACCATCATTGCCAA
TGTGCGGGTACTAGCTCTAGCCCCAGATGAAGTGATACCCATGGACCTGAAAAATGAGAA
GACATTCTTTGTAAAACTATCTTGGAATGAGAAAATATTCAAACCACTGTCTCCAGAACT
AGTTGCACAGTGGGATGAACGACAAGAAGGCAAACATAGATGCCAGAAGTCTGTGGCAGA
CAAAACTAAGAGCACAGAAAGCCCTTCTTGGACCACAGCAAAACATGAGGTCAAAAGGAT
TGAATCAAAGCATTCCACCTCTAAATCTCGTCAAACTCCTTCCCATCCTGTCACCCCAAG
GGCAAGGAAGAAGCTGGAGCTCAACAGTTTCCTTAGGACGCGTCACACTAGGATATCCCA
GCAGACATCCTCAGCCTCGTTGGATTCTCCCGGAAGAGCAAAAAGGAAAATGGCCTTCTC
AGAGATCACCTCGCCTTCAAAGAGGTCTCAGCATTATGGGCCTCTGACCTTATCTCCAGC
TCTGAAAGCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGATGATTCTGAACCTTATCCTAAGAAACACGCTCGAGTACAGTGGTTTGTCCGATT
CTGTGAAATCCCAGTCCATAAACAGCATTTGCTGGGCCGGAAGCCTGATGCACAAGAGAT
ATTCTGGTATGATAATTGTGCCTACAACAACAACGTTAACACTGAAACCATCATTGCCAA
TGTGCGGGTACTAGCTCTAGCCCCAGATGAAGTGATACCCATGGACCTGAAAAATGAGAA
GACATTCTTTGTAAAACTATCTTGGAATGAGAAAATATTCAAACCACTGTCTCCAGAACT
AGTTGCACAGTGGGATGAACGACAAGAAGGCAAACATAGATGCCAGAAGTCTGTGGCAGA
CAAAACTAAGAGCACAGAAAGCCCTTCTTGGACCACAGCAAAACATGAGGTCAAAAGGAT
TGAATCAAAGCATTCCACCTCTAAATCTCGTCAAACTCCTTCCCATCCTGTCACCCCAAG
GGCAAGGAAGAAGCTGGAGCTCAACAGTTTCCTTAGGACGCGTCACACTAGGATATCCCA
GCAGACATCCTCAGCCTCGTTGGATTCTCCCGGAAGAGCAAAAAGGAAAATGGCCTTCTC
AGAGATCACCTCGCCTTCAAAGAGGTCTCAGCATTATGGGCCTCTGACCTTATCTCCAGC
TCTGAAAGCCCC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               187-508, gnl|bosTau2|chr3 (63054731-63055052)
               

               
               187-508, gnl|Hg17|chr1 (52574058-52573737)
               

               
               187-508, gnl|Mm7|chr4 (107971767-107972085)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               187-508, gnl|bosTau2|chr3 (63054731-63055052)
               

               
               187-508, gnl|Hg17|chr1 (52574058-52573737)
               

               
               187-508, gnl|Mm7|chr4 (107971767-107972085)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nlu (0.191681)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               eje (0.0988338)

	187-508, gnl\|bosTau2\|chr3 (63054731-63055052)
	187-508, gnl\|Hg17\|chr1 (52574058-52573737)
	187-508, gnl\|Mm7\|chr4 (107971767-107972085)