Non-Coding RNA Search

Ss1.1-Pig3-SRG8002B17.3

Sequence:


               
               GACCCGGATCTCGGAGCTGACATCGGAGCTGACGGATGAACGTAACACAGGAGAGTCCGC
CTCCCAGCTGCTGGACGCGGAGACCGCAGAGAGGCTCCGGGCCGAGAAGGAGATGAAGGA
GCTGCAGACCCAGTACGATGCACTGAAGAAGAAAATGGAGGTGATGGAAATGGAGGTGAT
GGAGGCCCGTCTCATCCGGGCAGCTGAGGTCAACGGGGAAGTGGATGATGAGGACACAGG
CGGTGAGTGGCGTCTGAAGTATGAGCGAGCAGTGCGGGAGGTGGACTTCACCAAGAAGCG
GCTCCAGCAGGAGTTTGAGGACAAGCTGGAGGTGGAGCAGCAGAACAAGAGGCAGCTGGA
GAGGCGGCTCGGGGACCTGCAGGCTGATAGTGATGAGAGCCAGCGGGCCCTGCAGCAGCT
CAAGAAGAAGTGCCAGCGGCTGACGGCCGAGCTGCAGGACACCAAGCTGCACCTGGAGGG
CCAGCAGGTCCGCAACCATGAGCTGGAGAAGAAGCAGAGGAGGTTTGACAGCGAGCTCTC
GCAGGCGCATGAGGAGGCCCAGCGGGAGAAGCTGCAGCGGGAGAAGCTGCAGCGGGAAAA
GGACACGCTCCTCGCCGAGGCTTTCAGCCTGAAGCAGCAACTAGAGGAAAAAGACATGGA
CATTGCAGGATTCACCCAGAAGGTTGTGTCATTAGAGGCTGAGCTCCAGGACATTTCTTC
CCAAGAGTCCAAGGATGAGGCCTCTCTGGCCAAAGTCAAGAAACAGCTCCGAGACCTGGA
GGCCAAGGTCAAGGATCAGGAAGAGGAGCTGGACGAACAGGCGGGGACCATCCAGATGCT
GGAGCAGGCCAAGCTGCGACTCGAGATGGAGATGGAGCGGATGAGGCAGACCCATTCCAA
GGAGATGGAGAGTCGAGATGAGGAGGTGGAGGAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCCGGATCTCGGAGCTGACATCGGAGCTGACGGATGAACGTAACACAGGAGAGTCCGC
CTCCCAGCTGCTGGACGCGGAGACCGCAGAGAGGCTCCGGGCCGAGAAGGAGATGAAGGA
GCTGCAGACCCAGTACGATGCACTGAAGAAGAAAATGGAGGTGATGGAAATGGAGGTGAT
GGAGGCCCGTCTCATCCGGGCAGCTGAGGTCAACGGGGAAGTGGATGATGAGGACACAGG
CGGTGAGTGGCGTCTGAAGTATGAGCGAGCAGTGCGGGAGGTGGACTTCACCAAGAAGCG
GCTCCAGCAGGAGTTTGAGGACAAGCTGGAGGTGGAGCAGCAGAACAAGAGGCAGCTGGA
GAGGCGGCTCGGGGACCTGCAGGCTGATAGTGATGAGAGCCAGCGGGCCCTGCAGCAGCT
CAAGAAGAAGTGCCAGCGGCTGACGGCCGAGCTGCAGGACACCAAGCTGCACCTGGAGGG
CCAGCAGGTCCGCAACCATGAGCTGGAGAAGAAGCAGAGGAGGTTTGACAGCGAGCTCTC
GCAGGCGCATGAGGAGGCCCAGCGGGAGAAGCTGCAGCGGGAGAAGCTGCAGCGGGAAAA
GGACACGCTCCTCGCCGAGGCTTTCAGCCTGAAGCAGCAACTAGAGGAAAAAGACATGGA
CATTGCAGGATTCACCCAGAAGGTTGTGTCATTAGAGGCTGAGCTCCAGGACATTTCTTC
CCAAGAGTCCAAGGATGAGGCCTCTCTGGCCAAAGTCAAGAAACAGCTCCGAGACCTGGA
GGCCAAGGTCAAGGATCAGGAAGAGGAGCTGGACGAACAGGCGGGGACCATCCAGATGCT
GGAGCAGGCCAAGCTGCGACTCGAGATGGAGATGGAGCGGATGAGGCAGACCCATTCCAA
GGAGATGGAGAGTCGAGATGAGGAGGTGGAGGAGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               249-367, + strand, RNAz p=0.522574

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               249-367, + strand, RNAz p=0.522574

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               235-367, gnl|bosTau2|chr19 (13999912-13999780)
               

               
               235-367, gnl|canFam2|chr9 (46575148-46575286)
               

               
               235-367, gnl|danRer3|chrNA (2309673-2309539)
               

               
               235-367, gnl|echTel1|scaffold_311073 (44114-43976)
               

               
               235-367, gnl|fr1|chrUn (11188339-11188477)
               

               
               235-367, gnl|galGal2|chr19 (5546213-5546349)
               

               
               235-367, gnl|hg17|chr17 (24448363-24448501)
               

               
               235-367, gnl|Hg17|chr17 (24448499-24448367)
               

               
               235-367, gnl|loxAfr1|scaffold_608 (39710-39572)
               

               
               235-367, gnl|mm7|chr11 (77924812-77924674)
               

               
               235-367, gnl|Mm7|chr11 (77924674-77924806)
               

               
               235-367, gnl|monDom2|scaffold_44 (15138438-15138576)
               

               
               235-367, gnl|oryCun1|scaffold_206953 (120367-120505)
               

               
               235-367, gnl|panTro1|chr19 (27793861-27793999)
               

               
               235-367, gnl|rheMac2|chr16 (24316087-24316225)
               

               
               235-367, gnl|rn3|chr10 (63897650-63897512)
               

               
               235-367, gnl|tetNig1|chr16 (8896105-8896244)
               

               
               235-367, gnl|xenTro1|scaffold_370 (450199-450061)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               235-367, gnl|bosTau2|chr19 (13999912-13999780)
               

               
               235-367, gnl|canFam2|chr9 (46575148-46575286)
               

               
               235-367, gnl|danRer3|chrNA (2309673-2309539)
               

               
               235-367, gnl|echTel1|scaffold_311073 (44114-43976)
               

               
               235-367, gnl|fr1|chrUn (11188339-11188477)
               

               
               235-367, gnl|galGal2|chr19 (5546213-5546349)
               

               
               235-367, gnl|hg17|chr17 (24448363-24448501)
               

               
               235-367, gnl|Hg17|chr17 (24448499-24448367)
               

               
               235-367, gnl|loxAfr1|scaffold_608 (39710-39572)
               

               
               235-367, gnl|mm7|chr11 (77924812-77924674)
               

               
               235-367, gnl|Mm7|chr11 (77924674-77924806)
               

               
               235-367, gnl|monDom2|scaffold_44 (15138438-15138576)
               

               
               235-367, gnl|oryCun1|scaffold_206953 (120367-120505)
               

               
               235-367, gnl|panTro1|chr19 (27793861-27793999)
               

               
               235-367, gnl|rheMac2|chr16 (24316087-24316225)
               

               
               235-367, gnl|rn3|chr10 (63897650-63897512)
               

               
               235-367, gnl|tetNig1|chr16 (8896105-8896244)
               

               
               235-367, gnl|xenTro1|scaffold_370 (450199-450061)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               cje (0.165235)
               

               
               ssp (0.13552)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               ssp (0.13552)

	235-367, gnl\|bosTau2\|chr19 (13999912-13999780)
	235-367, gnl\|canFam2\|chr9 (46575148-46575286)
	235-367, gnl\|danRer3\|chrNA (2309673-2309539)
	235-367, gnl\|echTel1\|scaffold_311073 (44114-43976)
	235-367, gnl\|fr1\|chrUn (11188339-11188477)
	235-367, gnl\|galGal2\|chr19 (5546213-5546349)
	235-367, gnl\|hg17\|chr17 (24448363-24448501)
	235-367, gnl\|Hg17\|chr17 (24448499-24448367)
	235-367, gnl\|loxAfr1\|scaffold_608 (39710-39572)
	235-367, gnl\|mm7\|chr11 (77924812-77924674)
	235-367, gnl\|Mm7\|chr11 (77924674-77924806)
	235-367, gnl\|monDom2\|scaffold_44 (15138438-15138576)
	235-367, gnl\|oryCun1\|scaffold_206953 (120367-120505)
	235-367, gnl\|panTro1\|chr19 (27793861-27793999)
	235-367, gnl\|rheMac2\|chr16 (24316087-24316225)
	235-367, gnl\|rn3\|chr10 (63897650-63897512)
	235-367, gnl\|tetNig1\|chr16 (8896105-8896244)
	235-367, gnl\|xenTro1\|scaffold_370 (450199-450061)