Non-Coding RNA Search

Ss1.1-Pig3-SRG8002D07.3

Sequence:


               
               CACAGTGAGGTGCCTGGAAGCTGAAGTTTAAATGAAAAAGAAATGAGAGGACACACTTGA
GGCTGATTTCCTTCCTGATACACATCCTGGTCCCAGCCGGGGAAACTAAAAGGGTCAGGG
ACCCAAACAAGAAAGGCCACCCTTGGGTCCTAAATCACATCAGCTCAGGGCTACCGTTGG
ACTCTGGAATTCACCAAAGGGAATTCCCTTTTTCTCACTGCAGTCCTTTCTGGATCCTCT
TTCTGCTACCTCCAAAGCTTCCCACTACCTTTCTAGCCCGGTCATGTCCTAAAAATAATC
TCAGTGGGAGAGAGGTGCTTGTGCAAAGCACGGGGACCTATAACAGCTCAACAGAACGTG
TCTGTCAAGAGGCCTTTAGGCTGCCTGAGAATAGGTGAGTCAAGAGCCAAGAAATCATTG
AGATCAAGGCTTTGACTATTGACTGACTCCATGGCCCAGATCCTTTCTTCAGCTCTGGAA
AGGAAACACTTACACCACCTGGCATGTCTTTCTGAGCCAGGCAAGAGCAAAAGAAGGAAG
GAAAAATTTAGCACCTGAAGGCCATGGAGATTCCCGTGACTTGCAACCCAATAGCCAAAA
GAAATAGAGAAAAAGGATGAGGCTGAGGATATTGATAGTGTTTATCAGTAAGGATTATAA
ATACAGACAGGGTCAAAGTCTTCATCTCTGAATAACTGAGTTGGAATCACTTTTTTAAAA
CCTATATACACTTACTGTGCTCTCTTTCTCCTGCTGCTATTTTCTTTAGAAGAATATACT
TTCACATGAAACCCCCTCAAATCTTACAAATGTCTGTTTTTGCCAAGTTATAGAAATTAT
TACTGAAAAAAAAATTAGTGTTAAAAAGAAGTCAAATTTAATAAACGTTTGCTAAATGCC
TACTCTATGTCAGGTGCTGTGCAAGTTACTACATTCTGCAATTGAATATTATTCATCAAA
AATTGCATATAGTGGAATGAAGTATGAAGCTAATTTTTCTTCAATGTTGATATCCCCAGC
TTATCCACTTCTAAAACCAATTTTTCTTTGGTGAGACTAACTTACTCATTATTTTCTCAT
TAATATGGCCACCATTATAACCTTAATTTATTATTAGCATATCTGAAAACTACTTTATTA
CCTCTATACACTGAAGCACATTTTTTAAAGTCATTACTAAATGTATCACTAGTTTTCCTA
TTTTCCAGCAAAAGGAGCCTGAGAGATGCAGAAACATTTGTGCTGAAAAAATAAAAGCAT
TTAGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAGTGAGGTGCCTGGAAGCTGAAGTTTAAATGAAAAAGAAATGAGAGGACACACTTGA
GGCTGATTTCCTTCCTGATACACATCCTGGTCCCAGCCGGGGAAACTAAAAGGGTCAGGG
ACCCAAACAAGAAAGGCCACCCTTGGGTCCTAAATCACATCAGCTCAGGGCTACCGTTGG
ACTCTGGAATTCACCAAAGGGAATTCCCTTTTTCTCACTGCAGTCCTTTCTGGATCCTCT
TTCTGCTACCTCCAAAGCTTCCCACTACCTTTCTAGCCCGGTCATGTCCTAAAAATAATC
TCAGTGGGAGAGAGGTGCTTGTGCAAAGCACGGGGACCTATAACAGCTCAACAGAACGTG
TCTGTCAAGAGGCCTTTAGGCTGCCTGAGAATAGGTGAGTCAAGAGCCAAGAAATCATTG
AGATCAAGGCTTTGACTATTGACTGACTCCATGGCCCAGATCCTTTCTTCAGCTCTGGAA
AGGAAACACTTACACCACCTGGCATGTCTTTCTGAGCCAGGCAAGAGCAAAAGAAGGAAG
GAAAAATTTAGCACCTGAAGGCCATGGAGATTCCCGTGACTTGCAACCCAATAGCCAAAA
GAAATAGAGAAAAAGGATGAGGCTGAGGATATTGATAGTGTTTATCAGTAAGGATTATAA
ATACAGACAGGGTCAAAGTCTTCATCTCTGAATAACTGAGTTGGAATCACTTTTTTAAAA
CCTATATACACTTACTGTGCTCTCTTTCTCCTGCTGCTATTTTCTTTAGAAGAATATACT
TTCACATGAAACCCCCTCAAATCTTACAAATGTCTGTTTTTGCCAAGTTATAGAAATTAT
TACTGAAAAAAAAATTAGTGTTAAAAAGAAGTCAAATTTAATAAACGTTTGCTAAATGCC
TACTCTATGTCAGGTGCTGTGCAAGTTACTACATTCTGCAATTGAATATTATTCATCAAA
AATTGCATATAGTGGAATGAAGTATGAAGCTAATTTTTCTTCAATGTTGATATCCCCAGC
TTATCCACTTCTAAAACCAATTTTTCTTTGGTGAGACTAACTTACTCATTATTTTCTCAT
TAATATGGCCACCATTATAACCTTAATTTATTATTAGCATATCTGAAAACTACTTTATTA
CCTCTATACACTGAAGCACATTTTTTAAAGTCATTACTAAATGTATCACTAGTTTTCCTA
TTTTCCAGCAAAAGGAGCCTGAGAGATGCAGAAACATTTGTGCTGAAAAAATAAAAGCAT
TTAGAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1267, gnl|bosTau2|chr15 (27701771-27703020)
               

               
               1-1267, gnl|Hg17|chr11 (10537264-10535994)
               

               
               1-1267, gnl|Mm7|chr7 (106767528-106765930)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1267, gnl|bosTau2|chr15 (27701771-27703020)
               

               
               1-1267, gnl|Hg17|chr11 (10537264-10535994)
               

               
               1-1267, gnl|Mm7|chr7 (106767528-106765930)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               liv (0.438853)
               

               
               ste (0.405625)
               

               
               elu (0.385356)
               

               
               pla (0.267344)
               

               
               isp (0.150376)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.438853)
               

               
               ste (0.405625)
               

               
               elu (0.385356)
               

               
               pla (0.267344)
               

               
               isp (0.150376)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	1-1267, gnl\|bosTau2\|chr15 (27701771-27703020)
	1-1267, gnl\|Hg17\|chr11 (10537264-10535994)
	1-1267, gnl\|Mm7\|chr7 (106767528-106765930)

	liv (0.438853)
	ste (0.405625)
	elu (0.385356)
	pla (0.267344)
	isp (0.150376)
	ova (0.129132)
	ret (0.128733)
	tra (0.123092)
	jca (0.11396)
	jej (0.0989218)