Ss1.1-Pig3-SRG8002E04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTTCCCCCCCACAGTGTCGTCGAGTGCCTTTTGCAGTGCGAAGAAACTGAAAATAGAG CCCTCTGGCTGGGATGTTTCTGGACAGAGCAGCAACGACAAATACTATACTCACAGCAAA ACCCTCCCAGCCACACAAGGGCAAGCCAACTCCTCTCACCAGGTAGCAAATTTCAACATC CCTGCTTACGACCAGGGCCTACTCCTCCCAGCTCCTGCAGTGGAGCATATTGTTGTAACA GCCGCTGATAGCTCGGCCAGTGCTGCTACATCAACCTTCCAAAGCAGCCAGACCCTGACT CACAGAAGCAACGTTTCTTTGCTTGAGCCATATCAAAAATGTGGATTGAAAAGAAAAAGT GAGGAAGTTGACAGCAACGGTAGCGTGCAAATCATAGAAGAACATCCCCCTCTCATGCTG CAAAACAGGACTGTGGTGGGTGCTGCTGCCACGACCACCACTGTGACCACGAAGAGTAGC AGTTCCAGTGGAGAAGGGGATTACCAGCTGGTCCAGCATGAGATCCTTTGCTCTATGACC AACAGCTATGAAGTCTTGGAGTTCATAGGCCGGGGAACATTTGGACAGGTGGCTAAGTGC TGGAAGCGAAGCACCAAGGAAATTGTGGCTATTAAAATCTTGAAGAACCACCCCTCCTAT GCCAGACAAGGACAGATTGAAGTGAGCATCCTTTCTCGCCTAAGCAGTGAAAATGCTGAT GAGTATAATTTTGTCCGTTCTTACGAGTGTTTTCAGCATAAGAATCATACCTGCCTTGTG TTCGAGATGCTGGAGCAGAACTTATATGATTTTCTAAAGCAGAACAAGTTTAGCCCACTG CCACTCAAGTACATCAGACCAATCTTGCAGCAGGTGGCCACAGCCCTGATGAAGCTCAAG AGTCTTGGTCTGATTCATGCTGACCTTAAGCCTGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTTCCCCCCCACAGTGTCGTCGAGTGCCTTTTGCAGTGCGAAGAAACTGAAAATAGAG CCCTCTGGCTGGGATGTTTCTGGACAGAGCAGCAACGACAAATACTATACTCACAGCAAA ACCCTCCCAGCCACACAAGGGCAAGCCAACTCCTCTCACCAGGTAGCAAATTTCAACATC CCTGCTTACGACCAGGGCCTACTCCTCCCAGCTCCTGCAGTGGAGCATATTGTTGTAACA GCCGCTGATAGCTCGGCCAGTGCTGCTACATCAACCTTCCAAAGCAGCCAGACCCTGACT CACAGAAGCAACGTTTCTTTGCTTGAGCCATATCAAAAATGTGGATTGAAAAGAAAAAGT GAGGAAGTTGACAGCAACGGTAGCGTGCAAATCATAGAAGAACATCCCCCTCTCATGCTG CAAAACAGGACTGTGGTGGGTGCTGCTGCCACGACCACCACTGTGACCACGAAGAGTAGC AGTTCCAGTGGAGAAGGGGATTACCAGCTGGTCCAGCATGAGATCCTTTGCTCTATGACC AACAGCTATGAAGTCTTGGAGTTCATAGGCCGGGGAACATTTGGACAGGTGGCTAAGTGC TGGAAGCGAAGCACCAAGGAAATTGTGGCTATTAAAATCTTGAAGAACCACCCCTCCTAT GCCAGACAAGGACAGATTGAAGTGAGCATCCTTTCTCGCCTAAGCAGTGAAAATGCTGAT GAGTATAATTTTGTCCGTTCTTACGAGTGTTTTCAGCATAAGAATCATACCTGCCTTGTG TTCGAGATGCTGGAGCAGAACTTATATGATTTTCTAAAGCAGAACAAGTTTAGCCCACTG CCACTCAAGTACATCAGACCAATCTTGCAGCAGGTGGCCACAGCCCTGATGAAGCTCAAG AGTCTTGGTCTGATTCATGCTGACCTTAAGCCTGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 39-278, - strand, RNAz p=0.957875 | |
| 399-528, - strand, RNAz p=0.960873 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 39-278, - strand, RNAz p=0.957875 | |
| 399-528, - strand, RNAz p=0.960873 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-936, gnl|bosTau2|chr3 (27226807-27225871) | |
| 1-936, gnl|Hg17|chr1 (114195068-114196004) | |
| 1-936, gnl|Mm7|chr3 (103572261-103571325) | |
| 339-935, gnl|bosTau2|chr15 (38328836-38328231) | |
| 339-935, gnl|canFam2|chr18 (37385976-37385262) | |
| 339-935, gnl|danRer3|chr18 (31370176-31369447) | |
| 339-935, gnl|dasNov1|scaffold_5310 (4604-5318) | |
| 339-935, gnl|echTel1|scaffold_288963 (13026-13731) | |
| 339-935, gnl|fr1|chrUn (79956004-79956769) | |
| 339-935, gnl|galGal2|chr3 (42251068-42251782) | |
| 339-935, gnl|hg17|chr11 (33264904-33265618) | |
| 339-935, gnl|Hg17|chr11 (33264908-33265513) | |
| 339-935, gnl|loxAfr1|scaffold_6881 (16948-17662) | |
| 339-935, gnl|mm7|chr2 (104322267-104321553) | |
| 339-935, gnl|Mm7|chr2 (104322261-104321656) | |
| 339-935, gnl|monDom2|scaffold_10 (79475579-79476293) | |
| 339-935, gnl|oryCun1|scaffold_210800 (13623-12909) | |
| 339-935, gnl|panTro1|chr9 (33644651-33645365) | |
| 339-935, gnl|rheMac2|chr14 (38536660-38535946) | |
| 339-935, gnl|rn3|chr3 (89690956-89690242) | |
| 339-935, gnl|tetNig1|chr5 (4300590-4301356) | |
| 339-935, gnl|xenTro1|scaffold_719 (504983-505697) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-936, gnl|bosTau2|chr3 (27226807-27225871) | |
| 1-936, gnl|Hg17|chr1 (114195068-114196004) | |
| 1-936, gnl|Mm7|chr3 (103572261-103571325) | |
| 339-935, gnl|bosTau2|chr15 (38328836-38328231) | |
| 339-935, gnl|canFam2|chr18 (37385976-37385262) | |
| 339-935, gnl|danRer3|chr18 (31370176-31369447) | |
| 339-935, gnl|dasNov1|scaffold_5310 (4604-5318) | |
| 339-935, gnl|echTel1|scaffold_288963 (13026-13731) | |
| 339-935, gnl|fr1|chrUn (79956004-79956769) | |
| 339-935, gnl|galGal2|chr3 (42251068-42251782) | |
| 339-935, gnl|hg17|chr11 (33264904-33265618) | |
| 339-935, gnl|Hg17|chr11 (33264908-33265513) | |
| 339-935, gnl|loxAfr1|scaffold_6881 (16948-17662) | |
| 339-935, gnl|mm7|chr2 (104322267-104321553) | |
| 339-935, gnl|Mm7|chr2 (104322261-104321656) | |
| 339-935, gnl|monDom2|scaffold_10 (79475579-79476293) | |
| 339-935, gnl|oryCun1|scaffold_210800 (13623-12909) | |
| 339-935, gnl|panTro1|chr9 (33644651-33645365) | |
| 339-935, gnl|rheMac2|chr14 (38536660-38535946) | |
| 339-935, gnl|rn3|chr3 (89690956-89690242) | |
| 339-935, gnl|tetNig1|chr5 (4300590-4301356) | |
| 339-935, gnl|xenTro1|scaffold_719 (504983-505697) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (0.147427) |