Ss1.1-Pig3-SRG8002E12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTTACTGAAGGCACAGCATGGAGGCCGTGTCCAGCGCTGGGATGTGAGTCGTGACTGGC GTGCATTTGGGTGGTACCGTGGCCTAACAATATTCTCCAAGCCCCAACTTCTTGAGAATA CTTACTTCAGATATGCAAGCAAGCCAGCGCACCATAGCCTTAATTGTAGAAATGATCCAC ACTGCCAGTCTGGTCCACGATGATGTCATTGATGACGCAAGTTCCCGGAGAGGAAAACAC ACAGTTAATAAGATCTGGGGTGAAAAGAAAGCTGTCCTTGCTGGTGATTTAATTCTTTCT GCAGCATCGATAGCTCTGGCACGAATTGGAAATACAACTGTTATATCTATTTTAACCCAA GTGATTGAAGATTTGGTGCGTGGTGAATTTCTTCAGCTAGGGTCAAAAGAAAATGAGAAT GAACGATTTGCACACTACCTTGAAAAGACCTTCAAGAAGACTGCCAGTCTGATCGCCAAC AGTTGTAAAGCAGTATGTCTCTGTCCTCGGCTGCCCTGACCCCGCGGTACATGAGATCGC CTATCAATACGGGAAGAACGTGGGGGATCGCCTTCCAGCTCATAGACGACGTCCTGGAAC TTCACCTCGTGTTCTGACCAGATGGGCAAACCGACCTCGGCCGACCTGAAGCTCGGCTTA TCCACAGGCCCTGTCTTATTCGCTTGTCAGCAGTTTCCAGATATGAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTTACTGAAGGCACAGCATGGAGGCCGTGTCCAGCGCTGGGATGTGAGTCGTGACTGGC GTGCATTTGGGTGGTACCGTGGCCTAACAATATTCTCCAAGCCCCAACTTCTTGAGAATA CTTACTTCAGATATGCAAGCAAGCCAGCGCACCATAGCCTTAATTGTAGAAATGATCCAC ACTGCCAGTCTGGTCCACGATGATGTCATTGATGACGCAAGTTCCCGGAGAGGAAAACAC ACAGTTAATAAGATCTGGGGTGAAAAGAAAGCTGTCCTTGCTGGTGATTTAATTCTTTCT GCAGCATCGATAGCTCTGGCACGAATTGGAAATACAACTGTTATATCTATTTTAACCCAA GTGATTGAAGATTTGGTGCGTGGTGAATTTCTTCAGCTAGGGTCAAAAGAAAATGAGAAT GAACGATTTGCACACTACCTTGAAAAGACCTTCAAGAAGACTGCCAGTCTGATCGCCAAC AGTTGTAAAGCAGTATGTCTCTGTCCTCGGCTGCCCTGACCCCGCGGTACATGAGATCGC CTATCAATACGGGAAGAACGTGGGGGATCGCCTTCCAGCTCATAGACGACGTCCTGGAAC TTCACCTCGTGTTCTGACCAGATGGGCAAACCGACCTCGGCCGACCTGAAGCTCGGCTTA TCCACAGGCCCTGTCTTATTCGCTTGTCAGCAGTTTCCAGATATGAAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 124-269, gnl|bosTau2|chr13 (9241746-9241891) | |
| 124-269, gnl|canFam2|chr2 (9971229-9971371) | |
| 124-269, gnl|danRer3|chrUn (159986510-159986697) | |
| 124-269, gnl|dasNov1|scaffold_124189 (4215-4358) | |
| 124-269, gnl|echTel1|scaffold_311734 (133623-133478) | |
| 124-269, gnl|fr1|chrUn (134051430-134051628) | |
| 124-269, gnl|galGal2|chr2 (15432489-15432627) | |
| 124-269, gnl|Hg17|chr10 (27049148-27049293) | |
| 124-269, gnl|hg17|chr9 (5075629-5075765) | |
| 124-269, gnl|mm7|chr2 (22949689-22949549) | |
| 124-269, gnl|Mm7|chr2 (22949544-22949689) | |
| 124-269, gnl|monDom2|scaffold_7 (41688976-41689117) | |
| 124-269, gnl|oryCun1|scaffold_101103 (1345-1485) | |
| 124-269, gnl|panTro1|chr11_random (23991538-23991403) | |
| 124-269, gnl|rheMac2|chr15 (72126978-72126839) | |
| 124-269, gnl|tetNig1|chr6 (5602729-5602964) | |
| 124-269, gnl|xenTro1|scaffold_42 (951115-951256) | |
| 271-384, gnl|bosTau2|chr13 (9243400-9243513) | |
| 271-384, gnl|canFam2|chr2 (9968635-9968530) | |
| 271-384, gnl|canFam2|chr2 (9968496-9968565) | |
| 271-384, gnl|danRer3|chrUn (159984563-159984449) | |
| 271-384, gnl|danRer3|chrUn (159984347-159984484) | |
| 271-384, gnl|dasNov1|scaffold_124189 (1228-1111) | |
| 271-384, gnl|dasNov1|scaffold_124189 (1077-1146) | |
| 271-384, gnl|echTel1|scaffold_282535 (6376-6263) | |
| 271-384, gnl|echTel1|scaffold_282535 (6229-6298) | |
| 271-384, gnl|fr1|chrUn (134051382-134051289) | |
| 271-384, gnl|fr1|chrUn (134051176-134051324) | |
| 271-384, gnl|galGal2|chr2 (15431727-15431642) | |
| 271-384, gnl|galGal2|chr2 (15431608-15431677) | |
| 271-384, gnl|hg17|chr10 (27052706-27052821) | |
| 271-384, gnl|Hg17|chr10 (27052741-27052854) | |
| 271-384, gnl|hg17|chr9 (5075516-5075585) | |
| 271-384, gnl|loxAfr1|scaffold_26745 (7714-7822) | |
| 271-384, gnl|loxAfr1|scaffold_26745 (7856-7787) | |
| 271-384, gnl|mm7|chr2 (22952128-22952231) | |
| 271-384, gnl|mm7|chr2 (22952262-22952196) | |
| 271-384, gnl|Mm7|chr2 (22952151-22952264) | |
| 271-384, gnl|monDom2|scaffold_7 (41685859-41685740) | |
| 271-384, gnl|monDom2|scaffold_7 (41688875-41688935) | |
| 271-384, gnl|panTro1|chr11_random (23991651-23991582) | |
| 271-384, gnl|panTro1|chr8 (27331060-27331175) | |
| 271-384, gnl|rheMac2|chr15 (72127091-72127022) | |
| 271-384, gnl|rheMac2|chr9 (26836277-26836392) | |
| 271-384, gnl|tetNig1|chr6 (5602669-5602580) | |
| 271-384, gnl|tetNig1|chr6 (5602484-5602615) | |
| 271-384, gnl|xenTro1|scaffold_42 (950416-950324) | |
| 271-384, gnl|xenTro1|scaffold_42 (950290-950359) | |
| 574-693, gnl|bosTau2|chr13 (9250942-9251060) | |
| 574-693, gnl|canFam2|chr2 (9959691-9959551) | |
| 574-693, gnl|danRer3|chrUn (159982565-159982435) | |
| 574-693, gnl|echTel1|scaffold_185867 (8770-8631) | |
| 574-693, gnl|fr1|chrUn (134050823-134050698) | |
| 574-693, gnl|galGal2|chr2 (15424636-15424499) | |
| 574-693, gnl|hg17|chr10 (27064384-27064524) | |
| 574-693, gnl|Hg17|chr10 (27064394-27064514) | |
| 574-693, gnl|loxAfr1|scaffold_59546 (12291-12151) | |
| 574-693, gnl|monDom2|scaffold_7 (41672394-41672258) | |
| 574-693, gnl|oryCun1|scaffold_168552 (2230-2092) | |
| 574-693, gnl|panTro1|chr8 (27342720-27342860) | |
| 574-693, gnl|rheMac2|chr9 (26847943-26848083) | |
| 574-693, gnl|tetNig1|chr6 (5602138-5601998) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 124-269, gnl|bosTau2|chr13 (9241746-9241891) | |
| 124-269, gnl|canFam2|chr2 (9971229-9971371) | |
| 124-269, gnl|danRer3|chrUn (159986510-159986697) | |
| 124-269, gnl|dasNov1|scaffold_124189 (4215-4358) | |
| 124-269, gnl|echTel1|scaffold_311734 (133623-133478) | |
| 124-269, gnl|fr1|chrUn (134051430-134051628) | |
| 124-269, gnl|galGal2|chr2 (15432489-15432627) | |
| 124-269, gnl|Hg17|chr10 (27049148-27049293) | |
| 124-269, gnl|hg17|chr9 (5075629-5075765) | |
| 124-269, gnl|mm7|chr2 (22949689-22949549) | |
| 124-269, gnl|Mm7|chr2 (22949544-22949689) | |
| 124-269, gnl|monDom2|scaffold_7 (41688976-41689117) | |
| 124-269, gnl|oryCun1|scaffold_101103 (1345-1485) | |
| 124-269, gnl|panTro1|chr11_random (23991538-23991403) | |
| 124-269, gnl|rheMac2|chr15 (72126978-72126839) | |
| 124-269, gnl|tetNig1|chr6 (5602729-5602964) | |
| 124-269, gnl|xenTro1|scaffold_42 (951115-951256) | |
| 271-384, gnl|bosTau2|chr13 (9243400-9243513) | |
| 271-384, gnl|canFam2|chr2 (9968635-9968530) | |
| 271-384, gnl|canFam2|chr2 (9968496-9968565) | |
| 271-384, gnl|danRer3|chrUn (159984563-159984449) | |
| 271-384, gnl|danRer3|chrUn (159984347-159984484) | |
| 271-384, gnl|dasNov1|scaffold_124189 (1228-1111) | |
| 271-384, gnl|dasNov1|scaffold_124189 (1077-1146) | |
| 271-384, gnl|echTel1|scaffold_282535 (6376-6263) | |
| 271-384, gnl|echTel1|scaffold_282535 (6229-6298) | |
| 271-384, gnl|fr1|chrUn (134051382-134051289) | |
| 271-384, gnl|fr1|chrUn (134051176-134051324) | |
| 271-384, gnl|galGal2|chr2 (15431727-15431642) | |
| 271-384, gnl|galGal2|chr2 (15431608-15431677) | |
| 271-384, gnl|hg17|chr10 (27052706-27052821) | |
| 271-384, gnl|Hg17|chr10 (27052741-27052854) | |
| 271-384, gnl|hg17|chr9 (5075516-5075585) | |
| 271-384, gnl|loxAfr1|scaffold_26745 (7714-7822) | |
| 271-384, gnl|loxAfr1|scaffold_26745 (7856-7787) | |
| 271-384, gnl|mm7|chr2 (22952128-22952231) | |
| 271-384, gnl|mm7|chr2 (22952262-22952196) | |
| 271-384, gnl|Mm7|chr2 (22952151-22952264) | |
| 271-384, gnl|monDom2|scaffold_7 (41685859-41685740) | |
| 271-384, gnl|monDom2|scaffold_7 (41688875-41688935) | |
| 271-384, gnl|panTro1|chr11_random (23991651-23991582) | |
| 271-384, gnl|panTro1|chr8 (27331060-27331175) | |
| 271-384, gnl|rheMac2|chr15 (72127091-72127022) | |
| 271-384, gnl|rheMac2|chr9 (26836277-26836392) | |
| 271-384, gnl|tetNig1|chr6 (5602669-5602580) | |
| 271-384, gnl|tetNig1|chr6 (5602484-5602615) | |
| 271-384, gnl|xenTro1|scaffold_42 (950416-950324) | |
| 271-384, gnl|xenTro1|scaffold_42 (950290-950359) | |
| 574-693, gnl|bosTau2|chr13 (9250942-9251060) | |
| 574-693, gnl|canFam2|chr2 (9959691-9959551) | |
| 574-693, gnl|danRer3|chrUn (159982565-159982435) | |
| 574-693, gnl|echTel1|scaffold_185867 (8770-8631) | |
| 574-693, gnl|fr1|chrUn (134050823-134050698) | |
| 574-693, gnl|galGal2|chr2 (15424636-15424499) | |
| 574-693, gnl|hg17|chr10 (27064384-27064524) | |
| 574-693, gnl|Hg17|chr10 (27064394-27064514) | |
| 574-693, gnl|loxAfr1|scaffold_59546 (12291-12151) | |
| 574-693, gnl|monDom2|scaffold_7 (41672394-41672258) | |
| 574-693, gnl|oryCun1|scaffold_168552 (2230-2092) | |
| 574-693, gnl|panTro1|chr8 (27342720-27342860) | |
| 574-693, gnl|rheMac2|chr9 (26847943-26848083) | |
| 574-693, gnl|tetNig1|chr6 (5602138-5601998) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.172801) |