Non-Coding RNA Search

Ss1.1-Pig3-SRG8002G01.5

Sequence:


               
               TGCTGTGCCCGGCGGTGGTGGCGAAGGCGGCAGCGGCGGCTCTCAGTCGAGTTCTGCCTC
CGCGTCCGCGCCTGCCCGGAGCCCGCTGGGACAGACGGTTTGTCCCGGCGCGGCGAAAGG
ATGGTCATCCGCTGTTCATCGCCTCCTCCTCGGGCTTTCGTGGCGATAAGAAGAAGCAGC
AGGATGTGGTGAGATTTCTGGAAGCCAACAAGATAGAGTTTGAGGAAGTCGACATCACAA
TGTCAGAAGAACAGAGGCAGTGGATGTACAAAAACATCCCTCCGGAAAAGAAGCCTGCTC
AGGGCAACCCTCTGCCCCCACAGATATTTAATGGTGACCGATACTGCGGAGATTATGACA
GTTTTTTTGAATCCAAGGAGAGCAACACAGTCTTTTCGTTCTTAGGCCTGAAATCACAGT
TGGCATCAAAGGCAGAACCTTAGCAAAGCCAAGTGGAAGAGGATGGAGATGCATTTTGGA
GCATCCCCTGGCACTCGGCACACACCTGCTCACCGAATGCATCACTGTGACGAAAGCCAC
ACGCATAATCAGTAACTTTGCTTGCCATGGAAAAGGTGTTTGGGACGACATGGGTATAAG
GGGATTGCATGATTGCTTCAAACCAAATCAGGACTGTGGTGGGTTTTTTCTTCTTTTCAG
AATTGCCTGCAGTTGCCTCCCTCAGCCTGGAGGTACTGTAACCTGTGACAGGTGTGCTTC
CTGAATGGCTGAGCAATAAGTAGGTAGCACCATCAGAGAGAAAAGATTGGATCCGCCCTG
GGTTCTCGCTGATGCCAGTACCACTCAGACCTGCTTCTCCTCAAGCTGCCTAGGTGGTAT
CCTTGAAATGAGTCTGCAGCCTATTAGAATATTTTGATCAAGAAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGTGCCCGGCGGTGGTGGCGAAGGCGGCAGCGGCGGCTCTCAGTCGAGTTCTGCCTC
CGCGTCCGCGCCTGCCCGGAGCCCGCTGGGACAGACGGTTTGTCCCGGCGCGGCGAAAGG
ATGGTCATCCGCTGTTCATCGCCTCCTCCTCGGGCTTTCGTGGCGATAAGAAGAAGCAGC
AGGATGTGGTGAGATTTCTGGAAGCCAACAAGATAGAGTTTGAGGAAGTCGACATCACAA
TGTCAGAAGAACAGAGGCAGTGGATGTACAAAAACATCCCTCCGGAAAAGAAGCCTGCTC
AGGGCAACCCTCTGCCCCCACAGATATTTAATGGTGACCGATACTGCGGAGATTATGACA
GTTTTTTTGAATCCAAGGAGAGCAACACAGTCTTTTCGTTCTTAGGCCTGAAATCACAGT
TGGCATCAAAGGCAGAACCTTAGCAAAGCCAAGTGGAAGAGGATGGAGATGCATTTTGGA
GCATCCCCTGGCACTCGGCACACACCTGCTCACCGAATGCATCACTGTGACGAAAGCCAC
ACGCATAATCAGTAACTTTGCTTGCCATGGAAAAGGTGTTTGGGACGACATGGGTATAAG
GGGATTGCATGATTGCTTCAAACCAAATCAGGACTGTGGTGGGTTTTTTCTTCTTTTCAG
AATTGCCTGCAGTTGCCTCCCTCAGCCTGGAGGTACTGTAACCTGTGACAGGTGTGCTTC
CTGAATGGCTGAGCAATAAGTAGGTAGCACCATCAGAGAGAAAAGATTGGATCCGCCCTG
GGTTCTCGCTGATGCCAGTACCACTCAGACCTGCTTCTCCTCAAGCTGCCTAGGTGGTAT
CCTTGAAATGAGTCTGCAGCCTATTAGAATATTTTGATCAAGAAGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56203039|emb|CAB55867.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56203039|emb|CAB55867.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               224-343, - strand, RNAz p=0.537565
               

               
               464-583, - strand, RNAz p=0.859249

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               224-343, - strand, RNAz p=0.537565
               

               
               464-583, - strand, RNAz p=0.859249

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               26-888, gnl|bosTau2|chr5 (4517735-4516893)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-888, gnl|bosTau2|chr5 (4517735-4516893)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mcp (0.170648)
               

               
               cki (0.165235)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               cki (0.165235)

	224-343, - strand, RNAz p=0.537565
	464-583, - strand, RNAz p=0.859249