Non-Coding RNA Search

Ss1.1-Pig3-SRG8002G07.3

Sequence:


               
               GCATTTACATTATCTAAGTCATTTTTGTTAAGTGTTTCTGTTTTCACAAGCATTATTGGC
ATATTTTGTTTTTTGGCATCTTTGGATTGGACAAACATTTAATCATCCTACCTTTCAAAA
GAAGACTTGAATTCTTATGGAACAATAAGGAAACAGCAGAAAACAGGGGTTCTCCTGTTC
CTGAGGAAATAAAAATGACCTGTCAACAATTTATCCATTATCACCGTGATCTCTGTATCC
AAAACATTGTCAGGGAAAGAAGGTGTGGTCCAAAGACTTCTGCTGGGACCTTCTGTGGCT
GTGACTTGGTGAACTGGCTAATTGAAGTTGGCCTTGCCTCTGACCGTGGTGAAGCTGTGA
TATATGGAGACAGACTGGTGCAAGGGGGAGTGATCCAACATATCACCAATGAATATGAAT
TTCGGGATGAGTACTTGTTTTACAGATTTCTTCAAAAGAGTCCTGAACACAGTCCTCCTG
CCACTAATACACACACTCCCCAACAAGAAAGATATAAAGAAATTGAGCATTCATCCCCAC
CCACCAAGACCTAAGTTATGAAGGAAACAACCCCATATGGAGTCACATTCTGGCCCCAAA
TCTGTTACTTATTAGCTACGGGACCTTGGGTAAATCACAAGTTCTCTGAGCATCATTTGC
CTCTTCTGTAAAATTTGACATGTTCTCACCCCATGCTATGATTCTGTGATTTCATGTGTA
TGGAAAACACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATTTACATTATCTAAGTCATTTTTGTTAAGTGTTTCTGTTTTCACAAGCATTATTGGC
ATATTTTGTTTTTTGGCATCTTTGGATTGGACAAACATTTAATCATCCTACCTTTCAAAA
GAAGACTTGAATTCTTATGGAACAATAAGGAAACAGCAGAAAACAGGGGTTCTCCTGTTC
CTGAGGAAATAAAAATGACCTGTCAACAATTTATCCATTATCACCGTGATCTCTGTATCC
AAAACATTGTCAGGGAAAGAAGGTGTGGTCCAAAGACTTCTGCTGGGACCTTCTGTGGCT
GTGACTTGGTGAACTGGCTAATTGAAGTTGGCCTTGCCTCTGACCGTGGTGAAGCTGTGA
TATATGGAGACAGACTGGTGCAAGGGGGAGTGATCCAACATATCACCAATGAATATGAAT
TTCGGGATGAGTACTTGTTTTACAGATTTCTTCAAAAGAGTCCTGAACACAGTCCTCCTG
CCACTAATACACACACTCCCCAACAAGAAAGATATAAAGAAATTGAGCATTCATCCCCAC
CCACCAAGACCTAAGTTATGAAGGAAACAACCCCATATGGAGTCACATTCTGGCCCCAAA
TCTGTTACTTATTAGCTACGGGACCTTGGGTAAATCACAAGTTCTCTGAGCATCATTTGC
CTCTTCTGTAAAATTTGACATGTTCTCACCCCATGCTATGATTCTGTGATTTCATGTGTA
TGGAAAACACAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|21756207|dbj|BAC04835.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|21756207|dbj|BAC04835.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               421-540, - strand, RNAz p=0.990141

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               421-540, - strand, RNAz p=0.990141

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               261-732, gnl|bosTau2|chr2 (14464659-14464189)
               

               
               261-732, gnl|Hg17|chr2 (175126653-175126161)
               

               
               261-732, gnl|Mm7|chr2 (73187475-73187017)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               261-732, gnl|bosTau2|chr2 (14464659-14464189)
               

               
               261-732, gnl|Hg17|chr2 (175126653-175126161)
               

               
               261-732, gnl|Mm7|chr2 (73187475-73187017)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               col (0.195008)
               

               
               rec (0.17307)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               ese (0.126502)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               rec (0.17307)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               ese (0.126502)

	261-732, gnl\|bosTau2\|chr2 (14464659-14464189)
	261-732, gnl\|Hg17\|chr2 (175126653-175126161)
	261-732, gnl\|Mm7\|chr2 (73187475-73187017)

	col (0.195008)
	rec (0.17307)
	nmm (0.132802)
	ret (0.128733)
	ese (0.126502)