Ss1.1-Pig3-SRG8002G11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCAGAATGGTGGGCAAGAGAAATTATAGATTTCTACAATAACCAGATGAAGTTTGATG GCTTGTGGATTGACATGAATGAGCCATCAAGTTTTGTAAACGGAACAACTACTAATCAAT GCAGAAATACAGAGCTAAATTATCCACCTTATTTTCCAGAACTCACAAAAAGAACTGAAG GATTACATTTCAGAACCATGTGTATGGAAACCGAGCAGATTCTTAGTGATGGATCATCTG TTTTGCATTATGACGTTCACAATCTATATGGATGGTCACAAGTGAAACCTACTTATGATG CATTGCAGAAGGCAACTGGCAAAAGAGGAATTGTTATTTCTCGGTCCACATATCCTACTG CTGGACGTTGGGCAGGACACTGGCTTGGAGACAACTATGCAAAATGGGACAACTTGGACA AATCTATCATTGGTATGATGGAATTCAGTCTCTTTGGAATATCATATACTGGAGCAGATA TCTGTGGCTTCTTCAACAATTCGGAATATCAGCTCTGTGCCCGCTGGATGCAACTTGGAG CATTCTATCCATATTCAAGAAATCACAACATTGCATTTACTAGAAGACAAGACCCTGCCT CCTGGAATGAAACTTTTTCTGAAATGTCAAGGAATATTCTAAATATTAGATACACTTTAT TGCCCTATTTCTATACACAGATGCATGAAATCCATGCTTATGGTGGCACTGTTATCCGAC CCCTTTTGCATGAGTTCTTTAATGAAAAGCCAACCTGGGATATATTCAAACAGTTCCTAT GGGGTCCAGCCTTTTTGGTTACTCCTGTATTGGAACCTTTTGCTGACACTGTACAAGGCT ATGTCCCTAATGCTCGGTGGTTTGATTACCATACAGGCAAGGATATTGGTATCAGAGAAA CATTTCACATATTTTCAGCTCCTTTATACGAAATAAACCTACATGTCCGTGGTGGTCATA TTCTACCATGTCAAGAGCCTGCTCAAAACACATTTTTCAGTCGACAAAATTTCATGAAGC TCATTGTTGCTGCAGATGATAATCAGACGGCACAAGGAAATCTGTTTTGGGATGATGGAG AGACAATTGACACCTATGAAAGAGACTTATATTTCTTGGTACAATTTAATTTTAACAAGT CCATCTTGACAAGCACTATACTGAAAAATAGTTACATAAACAGAAATGAAATGAGGCTTG GATATGTCCTCATATGGGGGAAAGAAAAGACTTCTGTTAATGAAGTTAATCTCATATATA ATGGAAATAAAGAGACTGTTCCCTTTGTTGAAGACCTAAACCAGGAGATATTAAATATTG ATCTAAGAGGGTTAAATGTTACTCTAGATGAACCAATAGAAATCAGCTGGTCATGAAGAT CACCATCAGTCCCAGTTGACAAAGGGAAATTAACATCTGGACTTAAGTTTCATCATACTT ATAATTTTCCCTCTTCATTTGTTTCTTATTATGTGTAAAATATGATTTCCATACCATCTA CCTAAAGTTATTGCACAGTGCACAGATGATGTGGCCTAGATTCAATTTTTTAACATATTT GATAGATTTAATAGTTCTAGTTACTCTCACTATTAGTTAAAACTGTAAACTAGTTACTAA ATATATATGTGTGTAACTAAAATATAATTAAAATACTTGATTTTTAAATTAAGCTAACTT TTTGTATAATTTTATATAATATTTTCTTCAATGTTTAGTAAATTTAAGTTATGTACCAAT AATTGCCACCAGATTTCATTATTTCTTAGTATGTACATTAATTAGAAAAGAGAAAATAAA ATGTATATAAGTAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCAGAATGGTGGGCAAGAGAAATTATAGATTTCTACAATAACCAGATGAAGTTTGATG GCTTGTGGATTGACATGAATGAGCCATCAAGTTTTGTAAACGGAACAACTACTAATCAAT GCAGAAATACAGAGCTAAATTATCCACCTTATTTTCCAGAACTCACAAAAAGAACTGAAG GATTACATTTCAGAACCATGTGTATGGAAACCGAGCAGATTCTTAGTGATGGATCATCTG TTTTGCATTATGACGTTCACAATCTATATGGATGGTCACAAGTGAAACCTACTTATGATG CATTGCAGAAGGCAACTGGCAAAAGAGGAATTGTTATTTCTCGGTCCACATATCCTACTG CTGGACGTTGGGCAGGACACTGGCTTGGAGACAACTATGCAAAATGGGACAACTTGGACA AATCTATCATTGGTATGATGGAATTCAGTCTCTTTGGAATATCATATACTGGAGCAGATA TCTGTGGCTTCTTCAACAATTCGGAATATCAGCTCTGTGCCCGCTGGATGCAACTTGGAG CATTCTATCCATATTCAAGAAATCACAACATTGCATTTACTAGAAGACAAGACCCTGCCT CCTGGAATGAAACTTTTTCTGAAATGTCAAGGAATATTCTAAATATTAGATACACTTTAT TGCCCTATTTCTATACACAGATGCATGAAATCCATGCTTATGGTGGCACTGTTATCCGAC CCCTTTTGCATGAGTTCTTTAATGAAAAGCCAACCTGGGATATATTCAAACAGTTCCTAT GGGGTCCAGCCTTTTTGGTTACTCCTGTATTGGAACCTTTTGCTGACACTGTACAAGGCT ATGTCCCTAATGCTCGGTGGTTTGATTACCATACAGGCAAGGATATTGGTATCAGAGAAA CATTTCACATATTTTCAGCTCCTTTATACGAAATAAACCTACATGTCCGTGGTGGTCATA TTCTACCATGTCAAGAGCCTGCTCAAAACACATTTTTCAGTCGACAAAATTTCATGAAGC TCATTGTTGCTGCAGATGATAATCAGACGGCACAAGGAAATCTGTTTTGGGATGATGGAG AGACAATTGACACCTATGAAAGAGACTTATATTTCTTGGTACAATTTAATTTTAACAAGT CCATCTTGACAAGCACTATACTGAAAAATAGTTACATAAACAGAAATGAAATGAGGCTTG GATATGTCCTCATATGGGGGAAAGAAAAGACTTCTGTTAATGAAGTTAATCTCATATATA ATGGAAATAAAGAGACTGTTCCCTTTGTTGAAGACCTAAACCAGGAGATATTAAATATTG ATCTAAGAGGGTTAAATGTTACTCTAGATGAACCAATAGAAATCAGCTGGTCATGAAGAT CACCATCAGTCCCAGTTGACAAAGGGAAATTAACATCTGGACTTAAGTTTCATCATACTT ATAATTTTCCCTCTTCATTTGTTTCTTATTATGTGTAAAATATGATTTCCATACCATCTA CCTAAAGTTATTGCACAGTGCACAGATGATGTGGCCTAGATTCAATTTTTTAACATATTT GATAGATTTAATAGTTCTAGTTACTCTCACTATTAGTTAAAACTGTAAACTAGTTACTAA ATATATATGTGTGTAACTAAAATATAATTAAAATACTTGATTTTTAAATTAAGCTAACTT TTTGTATAATTTTATATAATATTTTCTTCAATGTTTAGTAAATTTAAGTTATGTACCAAT AATTGCCACCAGATTTCATTATTTCTTAGTATGTACATTAATTAGAAAAGAGAAAATAAA ATGTATATAAGTAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 158-298, gnl|bosTau2|chr1 (68089372-68089232) | |
| 158-298, gnl|Hg17|chr3 (166207446-166207306) | |
| 158-298, gnl|Mm7|chr3 (73013637-73013497) | |
| 299-455, gnl|bosTau2|chr1 (68084602-68084447) | |
| 299-455, gnl|Hg17|chr3 (166199163-166199008) | |
| 299-455, gnl|Mm7|chr3 (73012153-73011995) | |
| 585-735, gnl|bosTau2|chr1 (68080143-68079993) | |
| 585-735, gnl|canFam2|chr34 (33304464-33304620) | |
| 585-735, gnl|danRer3|chr16 (14209518-14209674) | |
| 585-735, gnl|dasNov1|scaffold_3167 (98811-98967) | |
| 585-735, gnl|echTel1|scaffold_314401 (52281-52125) | |
| 585-735, gnl|fr1|chrUn (247543083-247542927) | |
| 585-735, gnl|galGal2|chr9 (20666691-20666535) | |
| 585-735, gnl|hg17|chr3 (166194743-166194899) | |
| 585-735, gnl|Hg17|chr3 (166194895-166194745) | |
| 585-735, gnl|loxAfr1|scaffold_35777 (464-308) | |
| 585-735, gnl|mm7|chr3 (73008732-73008888) | |
| 585-735, gnl|Mm7|chr3 (73008884-73008734) | |
| 585-735, gnl|monDom2|scaffold_52 (7694460-7694304) | |
| 585-735, gnl|oryCun1|scaffold_211372 (13339-13495) | |
| 585-735, gnl|panTro1|chr2 (169650855-169651011) | |
| 585-735, gnl|rheMac2|chr2 (122387867-122387711) | |
| 585-735, gnl|rn3|chr2 (163485686-163485842) | |
| 585-735, gnl|tetNig1|chrUn_random (42840228-42840072) | |
| 585-735, gnl|xenTro1|scaffold_150 (1822097-1822253) | |
| 1138-1310, gnl|bosTau2|chr1 (68056942-68056770) | |
| 1138-1310, gnl|Hg17|chr3 (166182902-166182730) | |
| 1138-1310, gnl|Mm7|chr3 (72993147-72992975) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 158-298, gnl|bosTau2|chr1 (68089372-68089232) | |
| 158-298, gnl|Hg17|chr3 (166207446-166207306) | |
| 158-298, gnl|Mm7|chr3 (73013637-73013497) | |
| 299-455, gnl|bosTau2|chr1 (68084602-68084447) | |
| 299-455, gnl|Hg17|chr3 (166199163-166199008) | |
| 299-455, gnl|Mm7|chr3 (73012153-73011995) | |
| 585-735, gnl|bosTau2|chr1 (68080143-68079993) | |
| 585-735, gnl|canFam2|chr34 (33304464-33304620) | |
| 585-735, gnl|danRer3|chr16 (14209518-14209674) | |
| 585-735, gnl|dasNov1|scaffold_3167 (98811-98967) | |
| 585-735, gnl|echTel1|scaffold_314401 (52281-52125) | |
| 585-735, gnl|fr1|chrUn (247543083-247542927) | |
| 585-735, gnl|galGal2|chr9 (20666691-20666535) | |
| 585-735, gnl|hg17|chr3 (166194743-166194899) | |
| 585-735, gnl|Hg17|chr3 (166194895-166194745) | |
| 585-735, gnl|loxAfr1|scaffold_35777 (464-308) | |
| 585-735, gnl|mm7|chr3 (73008732-73008888) | |
| 585-735, gnl|Mm7|chr3 (73008884-73008734) | |
| 585-735, gnl|monDom2|scaffold_52 (7694460-7694304) | |
| 585-735, gnl|oryCun1|scaffold_211372 (13339-13495) | |
| 585-735, gnl|panTro1|chr2 (169650855-169651011) | |
| 585-735, gnl|rheMac2|chr2 (122387867-122387711) | |
| 585-735, gnl|rn3|chr2 (163485686-163485842) | |
| 585-735, gnl|tetNig1|chrUn_random (42840228-42840072) | |
| 585-735, gnl|xenTro1|scaffold_150 (1822097-1822253) | |
| 1138-1310, gnl|bosTau2|chr1 (68056942-68056770) | |
| 1138-1310, gnl|Hg17|chr3 (166182902-166182730) | |
| 1138-1310, gnl|Mm7|chr3 (72993147-72992975) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (5.59832) | |
| jej (1.48383) | |
| ill (0.351185) |