Ss1.1-Pig3-SRG8002G23.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACCTTACAAATTTCCACTCACTCCACCTCTAGAGTCATTCAACTTATGCTACTACACT TCCCAGGTCCCTGTCCCACCAATTTTGGGTTTTTATCAAGTGAAAGAGGAAGGAGTACAA CTGAAAATAACAGTTAATTTAAAACTTCATGAAAGTGTGAAAAACAGTTTTGAATTCTGT GAAGCTCATATACCTTTTTATAATAGAGGTCCAATCACACATGTGGAATACAAAGTTAGT TTTGGCCAGATTGAAGTATTTCGAGAGAAGAGCTTATTGGTCTGGATTATTGGACAGAAG TTCCCCAAATCAATGGAAATTAGTCTTTCTGGAACTGTAACTTTTGGAGCCAAAAGCCAT GAAAAGCAGCCATTTGACCATATTTGCATTGGAGGTACAGCATATTTAAAGCTTCATTTT AGGATCTTAGATTACACACTCACTGGGTGTTATGCGGATCAGCATTCAGTTCAGGTTTTT GCATCAGGAAAACCAAAAATAAGTACACACCGGAAACTGATTTCTTCCGACTATTACATC TGGAATTCTAAAGCTCCTGCTCCAATAACATATGGATCATTATTGCTATGATTGTCTCAT GTTAAATAGGATATATACAATATAAATTAAATCAGTCTTTTATTTTTAATGTGAATTCAC ATAACCTATGAGTGAACATCATTGATTTAATTATAAAATGCTCTTGTTTAGTGTTTTTAG TCTGACTTGGTTTGAAAGAATATTTTAAAGACTAATATATCCAGTTATGTTACCCTTTTA TTTTACTCAGGTATGATTCAGGGCATAAAATGTAGTGATTCACCTTCATCTTATTTTATA CTAGCCTGGGTCATGCTGCCCCACCCATTTTCCTTCCTGCCCCTGTGGCAGACATGGCTA ATCAATCATAGCCCTCTTTCTCCACTGAGCCTTCCTGGATATGGGCTGAAACTGCTTCTC AGTGCAGAGCTGCAAGCAGCCACTCCCAGTGGATTGTAGATGACTTGCAAGATAAAAACT ATTTGCTCTTCCAAACCAAAGTAATAACTGCTAGTATAATGTGTTGTTACAGAATTCCAA GAACCACATTACAATTAACTGTGAATCTCTTGAGAAAATGAAGGAAAATTGTTTAAATAG TAACCAGTTTTTAATCAGAACTACCCTACTAACTGATAAAGAGTCTGTGTATGTCTGTTT AAGGTGTTCATCTCTGTTCTAGAGTTAATTTTCAAGCAAAGTTATTATTAATCTGCTACG GTAACATTTTGTTTAAGATGTCAGTAAGCAAATTAAGAGAGATGAGATACCCTCAGAAGA TGAGTAAGCATAGTGTTTTGTGACGACTGAATATCTGCAGCCAAAATTCTAAAAATAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACCTTACAAATTTCCACTCACTCCACCTCTAGAGTCATTCAACTTATGCTACTACACT TCCCAGGTCCCTGTCCCACCAATTTTGGGTTTTTATCAAGTGAAAGAGGAAGGAGTACAA CTGAAAATAACAGTTAATTTAAAACTTCATGAAAGTGTGAAAAACAGTTTTGAATTCTGT GAAGCTCATATACCTTTTTATAATAGAGGTCCAATCACACATGTGGAATACAAAGTTAGT TTTGGCCAGATTGAAGTATTTCGAGAGAAGAGCTTATTGGTCTGGATTATTGGACAGAAG TTCCCCAAATCAATGGAAATTAGTCTTTCTGGAACTGTAACTTTTGGAGCCAAAAGCCAT GAAAAGCAGCCATTTGACCATATTTGCATTGGAGGTACAGCATATTTAAAGCTTCATTTT AGGATCTTAGATTACACACTCACTGGGTGTTATGCGGATCAGCATTCAGTTCAGGTTTTT GCATCAGGAAAACCAAAAATAAGTACACACCGGAAACTGATTTCTTCCGACTATTACATC TGGAATTCTAAAGCTCCTGCTCCAATAACATATGGATCATTATTGCTATGATTGTCTCAT GTTAAATAGGATATATACAATATAAATTAAATCAGTCTTTTATTTTTAATGTGAATTCAC ATAACCTATGAGTGAACATCATTGATTTAATTATAAAATGCTCTTGTTTAGTGTTTTTAG TCTGACTTGGTTTGAAAGAATATTTTAAAGACTAATATATCCAGTTATGTTACCCTTTTA TTTTACTCAGGTATGATTCAGGGCATAAAATGTAGTGATTCACCTTCATCTTATTTTATA CTAGCCTGGGTCATGCTGCCCCACCCATTTTCCTTCCTGCCCCTGTGGCAGACATGGCTA ATCAATCATAGCCCTCTTTCTCCACTGAGCCTTCCTGGATATGGGCTGAAACTGCTTCTC AGTGCAGAGCTGCAAGCAGCCACTCCCAGTGGATTGTAGATGACTTGCAAGATAAAAACT ATTTGCTCTTCCAAACCAAAGTAATAACTGCTAGTATAATGTGTTGTTACAGAATTCCAA GAACCACATTACAATTAACTGTGAATCTCTTGAGAAAATGAAGGAAAATTGTTTAAATAG TAACCAGTTTTTAATCAGAACTACCCTACTAACTGATAAAGAGTCTGTGTATGTCTGTTT AAGGTGTTCATCTCTGTTCTAGAGTTAATTTTCAAGCAAAGTTATTATTAATCTGCTACG GTAACATTTTGTTTAAGATGTCAGTAAGCAAATTAAGAGAGATGAGATACCCTCAGAAGA TGAGTAAGCATAGTGTTTTGTGACGACTGAATATCTGCAGCCAAAATTCTAAAAATAAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 60-206, gnl|bosTau2|chr10 (46446146-46446000) | |
| 60-206, gnl|canFam2|chr8 (35890926-35891082) | |
| 60-206, gnl|danRer3|chr17 (46878107-46877952) | |
| 60-206, gnl|echTel1|scaffold_318432 (53816-53660) | |
| 60-206, gnl|fr1|chrUn (35013083-35012928) | |
| 60-206, gnl|galGal2|chr5 (52313483-52313328) | |
| 60-206, gnl|hg17|chr14 (56818555-56818710) | |
| 60-206, gnl|Hg17|chr14 (56818553-56818699) | |
| 60-206, gnl|loxAfr1|scaffold_14907 (25288-25447) | |
| 60-206, gnl|mm7|chr14 (44411961-44412116) | |
| 60-206, gnl|Mm7|chr14 (44411959-44412105) | |
| 60-206, gnl|monDom2|scaffold_8 (69251920-69252075) | |
| 60-206, gnl|oryCun1|scaffold_94595 (5055-4899) | |
| 60-206, gnl|panTro1|chr15 (56272227-56272382) | |
| 60-206, gnl|rheMac2|chr7 (120294428-120294583) | |
| 60-206, gnl|rn3|chr15 (25082508-25082663) | |
| 60-206, gnl|tetNig1|chr10 (5004102-5003952) | |
| 60-206, gnl|xenTro1|scaffold_33 (1610068-1609913) | |
| 287-411, gnl|bosTau2|chr10 (46445108-46444984) | |
| 287-411, gnl|Hg17|chr14 (56819578-56819753) | |
| 287-411, gnl|Mm7|chr14 (44412735-44412859) | |
| 509-1380, gnl|bosTau2|chr10 (46438612-46437713) | |
| 509-1380, gnl|Hg17|chr14 (56825273-56826164) | |
| 509-1380, gnl|Mm7|chr14 (44417975-44419016) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 60-206, gnl|bosTau2|chr10 (46446146-46446000) | |
| 60-206, gnl|canFam2|chr8 (35890926-35891082) | |
| 60-206, gnl|danRer3|chr17 (46878107-46877952) | |
| 60-206, gnl|echTel1|scaffold_318432 (53816-53660) | |
| 60-206, gnl|fr1|chrUn (35013083-35012928) | |
| 60-206, gnl|galGal2|chr5 (52313483-52313328) | |
| 60-206, gnl|hg17|chr14 (56818555-56818710) | |
| 60-206, gnl|Hg17|chr14 (56818553-56818699) | |
| 60-206, gnl|loxAfr1|scaffold_14907 (25288-25447) | |
| 60-206, gnl|mm7|chr14 (44411961-44412116) | |
| 60-206, gnl|Mm7|chr14 (44411959-44412105) | |
| 60-206, gnl|monDom2|scaffold_8 (69251920-69252075) | |
| 60-206, gnl|oryCun1|scaffold_94595 (5055-4899) | |
| 60-206, gnl|panTro1|chr15 (56272227-56272382) | |
| 60-206, gnl|rheMac2|chr7 (120294428-120294583) | |
| 60-206, gnl|rn3|chr15 (25082508-25082663) | |
| 60-206, gnl|tetNig1|chr10 (5004102-5003952) | |
| 60-206, gnl|xenTro1|scaffold_33 (1610068-1609913) | |
| 287-411, gnl|bosTau2|chr10 (46445108-46444984) | |
| 287-411, gnl|Hg17|chr14 (56819578-56819753) | |
| 287-411, gnl|Mm7|chr14 (44412735-44412859) | |
| 509-1380, gnl|bosTau2|chr10 (46438612-46437713) | |
| 509-1380, gnl|Hg17|chr14 (56825273-56826164) | |
| 509-1380, gnl|Mm7|chr14 (44417975-44419016) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| vin (0.332557) | |
| isp (0.300752) | |
| col (0.195008) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| csk (0.140746) | |
| pla (0.133672) | |
| thg (0.126791) | |
| ese (0.126502) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.332557) | |
| isp (0.300752) | |
| col (0.195008) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| csk (0.140746) | |
| pla (0.133672) | |
| thg (0.126791) | |
| ese (0.126502) |