Non-Coding RNA Search

Ss1.1-Pig3-SRG8002H01.5

Sequence:


               
               AGCTGCTACACCTCCGATTCAACCCCTAACCTGGGAACCTCCATATGCTTGGGTGCGGCC
CTTAAAAAAAAAAAAATCTGAGTCAGATTGGATCAGAGAGGCAGACTGCTAAGGATGGTA
GAATAAGTATTTATTACACAGATTCAATGTTATACAACTGTTGGCATTGGTGAAGTCTAT
GCCAGGCTGACCCCCACTCTGGATCTGGTGATGGGCCTGAAGTCACTGTAGGTCAGGAAA
GAGAACTGGACATGGAATTTATAAGAACAAACCAAATCCCTTGCTCTCTCAGAGAACCTC
CAAAGTCAGTGCTATGAGTGACCTGTAAGTAGCTGGCCCCCATTGCCATGGGGCCACACA
TATGCCTAACCAGGACTCTGGGAGGCTGGAGGACTCTGAGAGTAGCTATGGCCTGTCACT
GCTAGCTTACCTTTCTAGCCTGGGGTAAATACTTCACAGTGCTTGGAATCATACGTTGAC
CTTGTGAGCACAAAAAAACAGCTGCTCCTTCGCTTCTGCCTCTCTCTCTGGTGCAAATTT
CTCTTGTGACCAACATTAATCCAGAACCACACAGAGAAGGGAATTCTGGGAAGTGTACCT
CCAGTTTAGCCAAATTGGTACAATACAGAGACAGCCTACTGAACATCCGGTGTGGGAAGT
TGCTTCAGTATTGCACCCGCAAATAGCCTACATGTGTGCCAGGTAGGAGGGTTTTACCTA
CCAGTTAAAAGTGCCTAACTGTGAGTATGGATTGCTAAGCCTGTTAGTGGCTAACTCATG
GATATAGAAATGAGTCAAGCAGAGTTCACTAACTTCAGTAGGGTCCTAGTCTCCATGGAC
TGTAACACAGCTCATGTCTCCCATAAATATTACTCATTAAGAGGCAATATGGACAAAGTA
TTTTTTAATATCAGAATTTAAAAGATGTTTGCATCTATTTAATCTTTCATGTGAAATGTT
TACTTGCATCTGAGGATCAAAAATATCCCCATTAAACTTGGAAGCAATACTATTCCCTTT
TATTAGTACATTTTTCTAATCTTTTTTAAATGTTTCAAAAATGAATGGATATATCAAAAC
AAACAGATGTATAGATACAGAGAACACACTAGTGGTTACAGGTAGAGAGAGGGGAAGAAG
ATTAAGAGGTACAGACTACTAGGTAAAAAGTAAACAAGACACAAGGATGTAATGAACAGC
ACAAGGAATATAACCAATCTTTTATAGTAACTTTAAATGGAGTATAATCTACAAATATGG
AATCACCACGTTGTAACCCTGAAACTAATATAACACTGTAAATCAACTGTATTTCCATAA
AGAACATAAAATGTATATTTCAAATGCAAGTTAAGTTTCTGACTATGAAACAGTACCCTC
CTTGTACTTCGCCAGCCTCTCTCCTTCATAAGTGAGGACTGCTCATTCTTCACGAACCTT
TCTCCCAAACTCTTTTGCTTTAATCTTGAGTTTGTGAACTTGAGACTCAGCTATCTCTGC
CCTTTCCTTAGCTTCATTCAACTCATGTTGTAGCTTCTTATACTTGGAAAGGTATTGATT
GGCTTCTGCTTCCGCTGCCTCGATTTGCTGCTTGTAACTTTGTGCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGCTACACCTCCGATTCAACCCCTAACCTGGGAACCTCCATATGCTTGGGTGCGGCC
CTTAAAAAAAAAAAAATCTGAGTCAGATTGGATCAGAGAGGCAGACTGCTAAGGATGGTA
GAATAAGTATTTATTACACAGATTCAATGTTATACAACTGTTGGCATTGGTGAAGTCTAT
GCCAGGCTGACCCCCACTCTGGATCTGGTGATGGGCCTGAAGTCACTGTAGGTCAGGAAA
GAGAACTGGACATGGAATTTATAAGAACAAACCAAATCCCTTGCTCTCTCAGAGAACCTC
CAAAGTCAGTGCTATGAGTGACCTGTAAGTAGCTGGCCCCCATTGCCATGGGGCCACACA
TATGCCTAACCAGGACTCTGGGAGGCTGGAGGACTCTGAGAGTAGCTATGGCCTGTCACT
GCTAGCTTACCTTTCTAGCCTGGGGTAAATACTTCACAGTGCTTGGAATCATACGTTGAC
CTTGTGAGCACAAAAAAACAGCTGCTCCTTCGCTTCTGCCTCTCTCTCTGGTGCAAATTT
CTCTTGTGACCAACATTAATCCAGAACCACACAGAGAAGGGAATTCTGGGAAGTGTACCT
CCAGTTTAGCCAAATTGGTACAATACAGAGACAGCCTACTGAACATCCGGTGTGGGAAGT
TGCTTCAGTATTGCACCCGCAAATAGCCTACATGTGTGCCAGGTAGGAGGGTTTTACCTA
CCAGTTAAAAGTGCCTAACTGTGAGTATGGATTGCTAAGCCTGTTAGTGGCTAACTCATG
GATATAGAAATGAGTCAAGCAGAGTTCACTAACTTCAGTAGGGTCCTAGTCTCCATGGAC
TGTAACACAGCTCATGTCTCCCATAAATATTACTCATTAAGAGGCAATATGGACAAAGTA
TTTTTTAATATCAGAATTTAAAAGATGTTTGCATCTATTTAATCTTTCATGTGAAATGTT
TACTTGCATCTGAGGATCAAAAATATCCCCATTAAACTTGGAAGCAATACTATTCCCTTT
TATTAGTACATTTTTCTAATCTTTTTTAAATGTTTCAAAAATGAATGGATATATCAAAAC
AAACAGATGTATAGATACAGAGAACACACTAGTGGTTACAGGTAGAGAGAGGGGAAGAAG
ATTAAGAGGTACAGACTACTAGGTAAAAAGTAAACAAGACACAAGGATGTAATGAACAGC
ACAAGGAATATAACCAATCTTTTATAGTAACTTTAAATGGAGTATAATCTACAAATATGG
AATCACCACGTTGTAACCCTGAAACTAATATAACACTGTAAATCAACTGTATTTCCATAA
AGAACATAAAATGTATATTTCAAATGCAAGTTAAGTTTCTGACTATGAAACAGTACCCTC
CTTGTACTTCGCCAGCCTCTCTCCTTCATAAGTGAGGACTGCTCATTCTTCACGAACCTT
TCTCCCAAACTCTTTTGCTTTAATCTTGAGTTTGTGAACTTGAGACTCAGCTATCTCTGC
CCTTTCCTTAGCTTCATTCAACTCATGTTGTAGCTTCTTATACTTGGAAAGGTATTGATT
GGCTTCTGCTTCCGCTGCCTCGATTTGCTGCTTGTAACTTTGTGCTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q91355_CHICK

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q91355_CHICK

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               253-1050, gnl|bosTau2|chr1 (28658616-28657809)
               

               
               253-1050, gnl|Hg17|chr3 (109582049-109582961)
               

               
               253-1050, gnl|Mm7|chr16 (49294788-49293900)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               253-1050, gnl|bosTau2|chr1 (28658616-28657809)
               

               
               253-1050, gnl|Hg17|chr3 (109582049-109582961)
               

               
               253-1050, gnl|Mm7|chr16 (49294788-49293900)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               eje (0.395335)
               

               
               ret (0.3862)
               

               
               col (0.195008)
               

               
               sin (0.174948)
               

               
               kid (0.129735)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.395335)
               

               
               ret (0.3862)
               

               
               col (0.195008)
               

               
               sin (0.174948)
               

               
               kid (0.129735)

	253-1050, gnl\|bosTau2\|chr1 (28658616-28657809)
	253-1050, gnl\|Hg17\|chr3 (109582049-109582961)
	253-1050, gnl\|Mm7\|chr16 (49294788-49293900)

	eje (0.395335)
	ret (0.3862)
	col (0.195008)
	sin (0.174948)
	kid (0.129735)