Non-Coding RNA Search

Ss1.1-Pig3-SRG8002H02.5

Sequence:


               
               GTTATGCAGAAATGTGTAACAGATCCCACGGTCCTCTCAAGTGTCTATTAGATAGGCAAT
AAGAACTACAGTGTAGCTGAAAATCATCTTCTAGCTGACTCTAAACCACTTTGTTTTTAA
ACAAGAAAAGCTGTGCTCTTTTATGTGATGCCTTTTTTATTTATTCAGGCTCTACCTACA
ATATGTGAATCAAACCGTTTAATGAACCCTGGGACATACCGATGACTATAATAAACTGGC
CTCTCTGAGTCATAGCAAATGGCCTTATTTCTCCCCGAAGTGAAGAAACTACACTTCAAG
GCGATTGGAACTTCCGAAGCCCTAAAAATAAAAAAGCACAGTCATAACTACCTGAAATAG
GAAGATCCAGTTTCATACAAACATTTGTATGACGTCAATCGTTGATGGCATTTTTTTTGT
CATGAAAAAAATAATGTAAATCACAGACTTTTGCCAAAGCTCTTATTTTTTTCCTTAAAT
CTCTCCAGAAAAAAAAAAATGCAAGTGATTAGATTCAATTATTGACTCGTTTTCACTTTT
TACCCATGACTTCTCCAAACCAAACCACAGTATATGTTGTAACAATATCTACGACCGCTG
TTAGCCCATTATACTCATTCCAATTAGGAGAAAAGAATGTGAATATTATATTCTGTGTTT
TGAGTGACAAGTTTCGAAAATTAAAAACACTGTATTTTTAAAAGGGAAATGCACTTAAAT
GAAAACAGTTATTACAAAAGTTAAGATTTAAAAAAAAAAGCAAGAGTTTTTATTAAGATG
TAATACCGGTAGAATATTTAAAAGGCACACCACATCTGAATAATCAATGTAAATATTTTC
TTTCAAAGTTGTAAGTTTTCCTATCATGTGTTGTAAAGTTTTCATAAACGAGGCTTTAAC
GTAAACACTGGTGACATAAACCATTCATTGCTACGTTGCTTATTGTGTTTTTATGCTGTT
TTATACTTTTTTATGAGTTACGATAGCAGCAATTAAGTTGTTTGTATTTTGCTTAACTAA
AACAAAAATGCTTTTATCTTGCTATAGAATAAACACATTTCAGTAAAACCTGTGGACTGT
ATTTTGATGCAACAACCAGGAAACTGTTCACTTTTCAAATAAAATGGCTATGTCAAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTATGCAGAAATGTGTAACAGATCCCACGGTCCTCTCAAGTGTCTATTAGATAGGCAAT
AAGAACTACAGTGTAGCTGAAAATCATCTTCTAGCTGACTCTAAACCACTTTGTTTTTAA
ACAAGAAAAGCTGTGCTCTTTTATGTGATGCCTTTTTTATTTATTCAGGCTCTACCTACA
ATATGTGAATCAAACCGTTTAATGAACCCTGGGACATACCGATGACTATAATAAACTGGC
CTCTCTGAGTCATAGCAAATGGCCTTATTTCTCCCCGAAGTGAAGAAACTACACTTCAAG
GCGATTGGAACTTCCGAAGCCCTAAAAATAAAAAAGCACAGTCATAACTACCTGAAATAG
GAAGATCCAGTTTCATACAAACATTTGTATGACGTCAATCGTTGATGGCATTTTTTTTGT
CATGAAAAAAATAATGTAAATCACAGACTTTTGCCAAAGCTCTTATTTTTTTCCTTAAAT
CTCTCCAGAAAAAAAAAAATGCAAGTGATTAGATTCAATTATTGACTCGTTTTCACTTTT
TACCCATGACTTCTCCAAACCAAACCACAGTATATGTTGTAACAATATCTACGACCGCTG
TTAGCCCATTATACTCATTCCAATTAGGAGAAAAGAATGTGAATATTATATTCTGTGTTT
TGAGTGACAAGTTTCGAAAATTAAAAACACTGTATTTTTAAAAGGGAAATGCACTTAAAT
GAAAACAGTTATTACAAAAGTTAAGATTTAAAAAAAAAAGCAAGAGTTTTTATTAAGATG
TAATACCGGTAGAATATTTAAAAGGCACACCACATCTGAATAATCAATGTAAATATTTTC
TTTCAAAGTTGTAAGTTTTCCTATCATGTGTTGTAAAGTTTTCATAAACGAGGCTTTAAC
GTAAACACTGGTGACATAAACCATTCATTGCTACGTTGCTTATTGTGTTTTTATGCTGTT
TTATACTTTTTTATGAGTTACGATAGCAGCAATTAAGTTGTTTGTATTTTGCTTAACTAA
AACAAAAATGCTTTTATCTTGCTATAGAATAAACACATTTCAGTAAAACCTGTGGACTGT
ATTTTGATGCAACAACCAGGAAACTGTTCACTTTTCAAATAAAATGGCTATGTCAAATTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               270-377, - strand, RNAz p=0.622889

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               270-377, - strand, RNAz p=0.622889

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1140, gnl|bosTau2|chr18 (22112407-22113529)
               

               
               1-1140, gnl|Hg17|chr16 (51030547-51029420)
               

               
               1-1140, gnl|Mm7|chr8 (88840767-88839608)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1140, gnl|bosTau2|chr18 (22112407-22113529)
               

               
               1-1140, gnl|Hg17|chr16 (51030547-51029420)
               

               
               1-1140, gnl|Mm7|chr8 (88840767-88839608)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fcc (0.39557)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)

	1-1140, gnl\|bosTau2\|chr18 (22112407-22113529)
	1-1140, gnl\|Hg17\|chr16 (51030547-51029420)
	1-1140, gnl\|Mm7\|chr8 (88840767-88839608)

	fcc (0.39557)
	fce (0.271592)
	ece (0.229305)
	lyg (0.133103)
	sug (0.127291)