Non-Coding RNA Search

Ss1.1-Pig3-SRG8002I06.3

Sequence:


               
               TGGGCTCCGGCGAGGGGACGGAGCCAGAGGATGAGTTCGAGGATGACAAGATTTCCTTGC
CTTTCGTGGTGACTGATCTCCGTGGCCGCAACTTGCGACCCATGCGGGAGCGGGCTGCTG
TCCAGGGTCAGTACCTGACAGTGGAGCAGCTCACACTGGACTTCGAGTATGTCATCAACG
AGGTCATCCGCCATGATGCCACTTGGGGTCACCAGTTCTGTTCCTTCAGCGACTATGACA
TTGTCATCCTAGAGGTCTGCCCAGAAACCAACCAGGTCCTCATTAACATTGGCCTGCTGC
TCCTGGCATTCCCATCCCCCACTGAGGAGGGCCAGCTCCGACCAAAGACTTATCACACCA
GCCTCAAGGTGGCATGGGACCTCAACACAGGCATCTTTGTGACAGTCAGCGTGGGTGACC
TCACTGAGGTCAAAGGGCAGACCAGCGGCAGTGTCTGGAGCTCATACCGTAAGAGCTGCG
TGGACATGGTCATGAAGTGGATGGTGCATGAGAGCAGCGGCTGGTATGTCAACAGGATGA
CCAACGAAGCACTGCACAAAGGGTGCTCACTGAAGGTTCTGGCGGACAGTGAGCGATACA
CGTGGATTGTGCTGTGAGGGCCCGGCCACCATGGACAATGACTCCAACTACCTCCGCGGC
ATGGGAGCTGGCCGCTTTCATGGCAGCATCTGCCCGGCTGGCCGGCCGACCGAATGATGA
CCGGCAATAGTGTTAGGCTGCGGGAAGGGGGCTGGGTGGGGCAGCCCCTGGTGGCATGAG
AGTCTGGACGCTTCTTATTTATGCCTATTTAAGTTGGAAAGGAGCAGAGGGAGGGAGCCC
CCTGCCCCACCAACTTTGAGCGCCCGCTTTCACCATAAGCTGGCCCTCATTCCTCGCGAG
TTTGCCTCATTCCTCGGCTACAGGCGTGGACATTGCCTTCCCCTGTCCAGGGAGGCCGGA
TGGATCCCGTCCCCCTATCCTTACCATCCCCAGCCTCCCTCCACATGAGGTGGTGAACCT
CGTAGCCATCACACCTCCCCCTCTCCACCCTGTTCCTCTTCACATAATAAATGTTTTATT
TCTGAACCTCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGCTCCGGCGAGGGGACGGAGCCAGAGGATGAGTTCGAGGATGACAAGATTTCCTTGC
CTTTCGTGGTGACTGATCTCCGTGGCCGCAACTTGCGACCCATGCGGGAGCGGGCTGCTG
TCCAGGGTCAGTACCTGACAGTGGAGCAGCTCACACTGGACTTCGAGTATGTCATCAACG
AGGTCATCCGCCATGATGCCACTTGGGGTCACCAGTTCTGTTCCTTCAGCGACTATGACA
TTGTCATCCTAGAGGTCTGCCCAGAAACCAACCAGGTCCTCATTAACATTGGCCTGCTGC
TCCTGGCATTCCCATCCCCCACTGAGGAGGGCCAGCTCCGACCAAAGACTTATCACACCA
GCCTCAAGGTGGCATGGGACCTCAACACAGGCATCTTTGTGACAGTCAGCGTGGGTGACC
TCACTGAGGTCAAAGGGCAGACCAGCGGCAGTGTCTGGAGCTCATACCGTAAGAGCTGCG
TGGACATGGTCATGAAGTGGATGGTGCATGAGAGCAGCGGCTGGTATGTCAACAGGATGA
CCAACGAAGCACTGCACAAAGGGTGCTCACTGAAGGTTCTGGCGGACAGTGAGCGATACA
CGTGGATTGTGCTGTGAGGGCCCGGCCACCATGGACAATGACTCCAACTACCTCCGCGGC
ATGGGAGCTGGCCGCTTTCATGGCAGCATCTGCCCGGCTGGCCGGCCGACCGAATGATGA
CCGGCAATAGTGTTAGGCTGCGGGAAGGGGGCTGGGTGGGGCAGCCCCTGGTGGCATGAG
AGTCTGGACGCTTCTTATTTATGCCTATTTAAGTTGGAAAGGAGCAGAGGGAGGGAGCCC
CCTGCCCCACCAACTTTGAGCGCCCGCTTTCACCATAAGCTGGCCCTCATTCCTCGCGAG
TTTGCCTCATTCCTCGGCTACAGGCGTGGACATTGCCTTCCCCTGTCCAGGGAGGCCGGA
TGGATCCCGTCCCCCTATCCTTACCATCCCCAGCCTCCCTCCACATGAGGTGGTGAACCT
CGTAGCCATCACACCTCCCCCTCTCCACCCTGTTCCTCTTCACATAATAAATGTTTTATT
TCTGAACCTCCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               749-1054, - strand, RNAz p=0.987818

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               749-1054, - strand, RNAz p=0.987818

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               123-264, gnl|bosTau2|chr7 (7841997-7841856)
               

               
               123-264, gnl|Hg17|chr19 (13931576-13931717)
               

               
               123-264, gnl|Mm7|chr8 (82681239-82681098)
               


               
               560-1090, gnl|bosTau2|chr7 (7840792-7840243)
               

               
               560-1090, gnl|Hg17|chr19 (13932750-13933260)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-264, gnl|bosTau2|chr7 (7841997-7841856)
               

               
               123-264, gnl|Hg17|chr19 (13931576-13931717)
               

               
               123-264, gnl|Mm7|chr8 (82681239-82681098)
               


               
               560-1090, gnl|bosTau2|chr7 (7840792-7840243)
               

               
               560-1090, gnl|Hg17|chr19 (13932750-13933260)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	123-264, gnl\|bosTau2\|chr7 (7841997-7841856)
	123-264, gnl\|Hg17\|chr19 (13931576-13931717)
	123-264, gnl\|Mm7\|chr8 (82681239-82681098)

	560-1090, gnl\|bosTau2\|chr7 (7840792-7840243)
	560-1090, gnl\|Hg17\|chr19 (13932750-13933260)