Non-Coding RNA Search

Ss1.1-Pig3-SRG8002I07.5

Sequence:


               
               AAAAAAAAAAAAACTACAGATCATATAAGCAAGACAGTGGCACTTAAATTTTTAATTCAC
TAATCTGTTTGAAACTGATGCAATTTATGGCTTTCTCTCCAAATCACTTTTTTTTGGTGA
TTTTTCTGCCCCAAATCACAAATATCTTTGGGGAAGTTTAACAGTATGATTGCACTAAAT
AAACTACTTTGAATAGAGTCCAAATTAATCTTGTAAAAGTGATGATAATCATCAGGTACT
CAGTGAAATCGCATTATTTTCCAAAACCTAAAAGTTGTAGCTGCAGAAGCCCAAGGCCGG
GAGATGGCAGCGTTGGGATCAACATTTTTCTCCAGGGTTCACCATGCAGGCAACATTACC
CTGTCTTTCAGAAGACATCTGCCTTATGCAAGGGGAAACCTGTGAAAGCTGCACTCAGAG
GGAGGAGTTTTTCTTACATAAGTTGCAATTTCAGGAATTTAATTTATAGGCAGATCTTTA
AATACAGCCAACTTACATGCACAGCAATATGAAAGCCACATTTGGAAGGTGATCAATACA
CAGCATGCAGACTGGGAGCTTCTAAGAGAAGAAATGGCTTAACAAGAGCAGCTTTTAGCT
CAGACTGACTTTTTATGAAATCGGAATTTCAACGCAACCAGGTTTGGGATGGAGACAGTC
TGCATCAGCTTTTTGTATTAACAAAGTTACTGGCTCTTTGTGTGTCTCTGGGTAACTTTG
CTTGATTAAACAGCAAAGCCATATTCTAAATTCACTGTTGAATGCCTGTCCCAGTCCAAA
TTGTCTGTCTGCTCTTATTTTTGTACCATATTGCTCTTAAAAAATAAATCTTGGTTTGGT
ACAATTCATAATTCACCAAAACGTCTTCATATAATTTAAAAAACACACTAAATTAGTTTA
AAATGAAGCAATTTATATCTTTATGCAAAAACATATGTCTGTCTTTGCAAAGGACTGTAA
GCAGATTACAATAAATCCTTTACTTTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAACTACAGATCATATAAGCAAGACAGTGGCACTTAAATTTTTAATTCAC
TAATCTGTTTGAAACTGATGCAATTTATGGCTTTCTCTCCAAATCACTTTTTTTTGGTGA
TTTTTCTGCCCCAAATCACAAATATCTTTGGGGAAGTTTAACAGTATGATTGCACTAAAT
AAACTACTTTGAATAGAGTCCAAATTAATCTTGTAAAAGTGATGATAATCATCAGGTACT
CAGTGAAATCGCATTATTTTCCAAAACCTAAAAGTTGTAGCTGCAGAAGCCCAAGGCCGG
GAGATGGCAGCGTTGGGATCAACATTTTTCTCCAGGGTTCACCATGCAGGCAACATTACC
CTGTCTTTCAGAAGACATCTGCCTTATGCAAGGGGAAACCTGTGAAAGCTGCACTCAGAG
GGAGGAGTTTTTCTTACATAAGTTGCAATTTCAGGAATTTAATTTATAGGCAGATCTTTA
AATACAGCCAACTTACATGCACAGCAATATGAAAGCCACATTTGGAAGGTGATCAATACA
CAGCATGCAGACTGGGAGCTTCTAAGAGAAGAAATGGCTTAACAAGAGCAGCTTTTAGCT
CAGACTGACTTTTTATGAAATCGGAATTTCAACGCAACCAGGTTTGGGATGGAGACAGTC
TGCATCAGCTTTTTGTATTAACAAAGTTACTGGCTCTTTGTGTGTCTCTGGGTAACTTTG
CTTGATTAAACAGCAAAGCCATATTCTAAATTCACTGTTGAATGCCTGTCCCAGTCCAAA
TTGTCTGTCTGCTCTTATTTTTGTACCATATTGCTCTTAAAAAATAAATCTTGGTTTGGT
ACAATTCATAATTCACCAAAACGTCTTCATATAATTTAAAAAACACACTAAATTAGTTTA
AAATGAAGCAATTTATATCTTTATGCAAAAACATATGTCTGTCTTTGCAAAGGACTGTAA
GCAGATTACAATAAATCCTTTACTTTAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               302-417, - strand, RNAz p=0.932532
               

               
               647-763, - strand, RNAz p=0.907127
               

               
               844-962, - strand, RNAz p=0.518958

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               302-417, - strand, RNAz p=0.932532
               

               
               647-763, - strand, RNAz p=0.907127
               

               
               844-962, - strand, RNAz p=0.518958

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-988, gnl|bosTau2|chr17 (6062044-6061064)
               

               
               4-988, gnl|Hg17|chr4 (149358492-149357523)
               

               
               4-988, gnl|Mm7|chr8 (75787733-75788651)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-988, gnl|bosTau2|chr17 (6062044-6061064)
               

               
               4-988, gnl|Hg17|chr4 (149358492-149357523)
               

               
               4-988, gnl|Mm7|chr8 (75787733-75788651)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               aor (0.390549)
               

               
               ova (0.387397)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               ova (0.387397)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

	302-417, - strand, RNAz p=0.932532
	647-763, - strand, RNAz p=0.907127
	844-962, - strand, RNAz p=0.518958

	4-988, gnl\|bosTau2\|chr17 (6062044-6061064)
	4-988, gnl\|Hg17\|chr4 (149358492-149357523)
	4-988, gnl\|Mm7\|chr8 (75787733-75788651)

	aor (0.390549)
	ova (0.387397)
	liv (0.292569)
	fce (0.271592)
	cmu (0.186393)
	sag (0.182715)
	gul (0.177588)
	rec (0.17307)
	nco (0.161734)
	fco (0.157208)
	lin (0.145603)
	ste (0.135208)
	ldo (0.0970026)