Non-Coding RNA Search

Ss1.1-Pig3-SRG8002J14.5

Sequence:


               
               CAGAAGAACAGCCCTGCTAAAGAGCCGGCGGTTGCACTCAAGCGCAGTGCTGGCGCTGCT
GGCGGACGACCGGCATATCATCTCGGGCAGTGAGGACCACACGCTCGTGGTGTTCGACCG
CCGAGCCAACAGCGTCCTGCAGCGGCTGCAGCTGGACTCCTACCTGCTCTGCATGTCCTA
CCAGGAGCCTCAGCTCTGGGCAGGCGATAACCAGGGCCTGTTGCATGTCTTCGCCAACCG
CCACGGCTGCTTCCAGCTCGTCAGGTCCTTTGATGTGGGCCACAGGTCTCAGATCACAGG
GATCAAACACTCCCTGGGGGCCTTGTACACCACATCCACCGACAAGACCATCCGGGTACA
CGTGCCCACAGACCCACCAAGGACCATCTGCACTCGAAGCCACCACAACGTGCTGAATGG
GATCTGCGCTGAGGGCAACCTGGTGGTGGCCGCCTCTGGAGGCCTGTCACTGGAGGTCTG
GAGGCTGCAGGCCTGAGGAAACGGATGTGGATGGATGGGATCTGCTGGCCAGCAGGCTGG
GCCGTGGATTCTCTTCTGGGGGAACTTCCCCCATGCTGGTGCTGCCTCTGTCCCACCCAC
AGGCCTAGGGAACCCAGGGTTCTGGCCACAGTCGGGTGTGGGGGGTCCCTGGGCTGGGCA
TCCCCAGGGGAGGTGAGGTTTGTGTTCCAGCCCACCCAGGGGGCTGCTCCGCTCCCCACC
CTCAGGTTCTGTTTTTGTTAGGATTTGGATGCCTGCTTTCCCTGGAGCGGAGGAGAAATA
AAGTTGATATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAAGAACAGCCCTGCTAAAGAGCCGGCGGTTGCACTCAAGCGCAGTGCTGGCGCTGCT
GGCGGACGACCGGCATATCATCTCGGGCAGTGAGGACCACACGCTCGTGGTGTTCGACCG
CCGAGCCAACAGCGTCCTGCAGCGGCTGCAGCTGGACTCCTACCTGCTCTGCATGTCCTA
CCAGGAGCCTCAGCTCTGGGCAGGCGATAACCAGGGCCTGTTGCATGTCTTCGCCAACCG
CCACGGCTGCTTCCAGCTCGTCAGGTCCTTTGATGTGGGCCACAGGTCTCAGATCACAGG
GATCAAACACTCCCTGGGGGCCTTGTACACCACATCCACCGACAAGACCATCCGGGTACA
CGTGCCCACAGACCCACCAAGGACCATCTGCACTCGAAGCCACCACAACGTGCTGAATGG
GATCTGCGCTGAGGGCAACCTGGTGGTGGCCGCCTCTGGAGGCCTGTCACTGGAGGTCTG
GAGGCTGCAGGCCTGAGGAAACGGATGTGGATGGATGGGATCTGCTGGCCAGCAGGCTGG
GCCGTGGATTCTCTTCTGGGGGAACTTCCCCCATGCTGGTGCTGCCTCTGTCCCACCCAC
AGGCCTAGGGAACCCAGGGTTCTGGCCACAGTCGGGTGTGGGGGGTCCCTGGGCTGGGCA
TCCCCAGGGGAGGTGAGGTTTGTGTTCCAGCCCACCCAGGGGGCTGCTCCGCTCCCCACC
CTCAGGTTCTGTTTTTGTTAGGATTTGGATGCCTGCTTTCCCTGGAGCGGAGGAGAAATA
AAGTTGATATAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26324325|dbj|BAB22977.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26324325|dbj|BAB22977.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               38-540, + strand, RNAz p=0.805603

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-540, + strand, RNAz p=0.805603

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_032301, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_032301, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               9-155, gnl|bosTau2|chr7 (8409348-8409202)
               

               
               9-155, gnl|Hg17|chr19 (12661918-12661772)
               

               
               9-155, gnl|Mm7|chr8 (83654607-83654753)
               


               
               421-792, gnl|bosTau2|chr7 (8408557-8408189)
               

               
               421-792, gnl|Hg17|chr19 (12661105-12660741)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-155, gnl|bosTau2|chr7 (8409348-8409202)
               

               
               9-155, gnl|Hg17|chr19 (12661918-12661772)
               

               
               9-155, gnl|Mm7|chr8 (83654607-83654753)
               


               
               421-792, gnl|bosTau2|chr7 (8408557-8408189)
               

               
               421-792, gnl|Hg17|chr19 (12661105-12660741)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	9-155, gnl\|bosTau2\|chr7 (8409348-8409202)
	9-155, gnl\|Hg17\|chr19 (12661918-12661772)
	9-155, gnl\|Mm7\|chr8 (83654607-83654753)

	421-792, gnl\|bosTau2\|chr7 (8408557-8408189)
	421-792, gnl\|Hg17\|chr19 (12661105-12660741)