Non-Coding RNA Search

Ss1.1-Pig3-SRG8002K04.5.5

Sequence:


               
               TTATCATAAGGAGTTGTCTGGCAGGCTATATGTTTAATTACCAGTGAGATGTAGATGTTG
GTTGTGGGAATTTCAAAAATGAGTGAGTTTGCCATAACTTAAATTCTCTGGGTTACAAAC
ACAAGAACGTGAAATGCTATTAGTTTAAAATATATAACCCTGCAATAAGAAACATAACAT
GTCTGCCAGATCTGGTTTATGAAAAATTGAAAAATATTAAATATGCTACAGACTCAAACC
CTTTGAAAGCACAAAATAACCACCCAGTTCTGGATTTACTTGATATTCCTAGTTCAGTAG
TATTTTGTTGAAAAAAGTTCAAATTGAAAGTTCATTAAAATGTACTTAAATATACATTAC
AGGGCTTTCATCTTTTTTTCTCAAAGCAGTGGCATTTTCCCATAATTTAAAAGTGGCATT
TTCCCATAATTTAAAAGTGATTCTCTCCCTAGTGTATTATTTGCTATCCTTACTATATTT
TCAAATAGAATTAAAATGCTTGAGCACTTCCTTTTCAGAAAGTTATGAAATTAAAAATAT
TTTTGATGGTCATTAAAATGTGTCTGTATGCTTGTTATGCCCCTTTTTTGTATGCTTGTT
ATGCCCCTTTTTCTAGGACTCAAAACTTGAGACATTGTTCAGAAATGCTCTAGAATCAAA
TCAAACATTAAATCCTGGGTCCAGTTTTTTTCCATCTTTCAGAACTTCATGGAATAAGAA
TTTCAGAACTTCATGGAATAAGAAAATCATCTAGTACAAATTGAACATGAAATGTTTTTA
GGCAAGGTAGAGATAGTAAGTACATTACTTATCCATGGACTTCACGCCAGTCCATCAGAG
CAGGAGTTCTACACATTAGAAATGGAATGGGATCAGCCTAACATTCTTTGGGGTTGGTTT
TCTTTTGCTGTATTCTTTGAATGGGGATGGGGGCCCAAGTGTCCTTATGAAGCTGTGGTC
AACAACAAGAGCTTGTGGGGGAGCGGCAGTGCTCTGCTGCATTCCTGCATCTGGCAACAC
AACAGCAAACATGTTTTTACTAGAGTAGCCCTCACATTAAATAAAACCATCACAGACTAT
ATTGTATAGTTACGTTGCTAATTTTCCTTTGAAATATAAAATATTTTAAGCTTTTTTTTT
TTTTTGTCAAAAGTGGTAACATCTTAATACAAATAAAAACCTTTTTGTGGTTGTAAGATT
TAGCTTATAAATCATTCAAATTGAAGTGAAAGATTACCAGGTCATTGTTAATGACTTAGT
CTATTAAGAATATATGTATTTTTGTAAAGGAGAAGCACTTGTAGATATTTAATCAGTACT
ATATGTCTGTTTTGCAGAAATAAAATGCTGCTTAGAGATTCTCTTTAAATACTTTTTATT
TTTGTGCTCAAATGTATTTTCTGTTTATCTATGGAGTGTTCTGTACAAAGCTGTATGATT
GTACTGTTGGGCTAGATACCTTTGTTTTTTAAAATCTGGTCTTAGCCAAGTATATTTGAC
CATGTTAAAAATAGTATCTTTGTTATTAAAAAATTCAATTGCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATCATAAGGAGTTGTCTGGCAGGCTATATGTTTAATTACCAGTGAGATGTAGATGTTG
GTTGTGGGAATTTCAAAAATGAGTGAGTTTGCCATAACTTAAATTCTCTGGGTTACAAAC
ACAAGAACGTGAAATGCTATTAGTTTAAAATATATAACCCTGCAATAAGAAACATAACAT
GTCTGCCAGATCTGGTTTATGAAAAATTGAAAAATATTAAATATGCTACAGACTCAAACC
CTTTGAAAGCACAAAATAACCACCCAGTTCTGGATTTACTTGATATTCCTAGTTCAGTAG
TATTTTGTTGAAAAAAGTTCAAATTGAAAGTTCATTAAAATGTACTTAAATATACATTAC
AGGGCTTTCATCTTTTTTTCTCAAAGCAGTGGCATTTTCCCATAATTTAAAAGTGGCATT
TTCCCATAATTTAAAAGTGATTCTCTCCCTAGTGTATTATTTGCTATCCTTACTATATTT
TCAAATAGAATTAAAATGCTTGAGCACTTCCTTTTCAGAAAGTTATGAAATTAAAAATAT
TTTTGATGGTCATTAAAATGTGTCTGTATGCTTGTTATGCCCCTTTTTTGTATGCTTGTT
ATGCCCCTTTTTCTAGGACTCAAAACTTGAGACATTGTTCAGAAATGCTCTAGAATCAAA
TCAAACATTAAATCCTGGGTCCAGTTTTTTTCCATCTTTCAGAACTTCATGGAATAAGAA
TTTCAGAACTTCATGGAATAAGAAAATCATCTAGTACAAATTGAACATGAAATGTTTTTA
GGCAAGGTAGAGATAGTAAGTACATTACTTATCCATGGACTTCACGCCAGTCCATCAGAG
CAGGAGTTCTACACATTAGAAATGGAATGGGATCAGCCTAACATTCTTTGGGGTTGGTTT
TCTTTTGCTGTATTCTTTGAATGGGGATGGGGGCCCAAGTGTCCTTATGAAGCTGTGGTC
AACAACAAGAGCTTGTGGGGGAGCGGCAGTGCTCTGCTGCATTCCTGCATCTGGCAACAC
AACAGCAAACATGTTTTTACTAGAGTAGCCCTCACATTAAATAAAACCATCACAGACTAT
ATTGTATAGTTACGTTGCTAATTTTCCTTTGAAATATAAAATATTTTAAGCTTTTTTTTT
TTTTTGTCAAAAGTGGTAACATCTTAATACAAATAAAAACCTTTTTGTGGTTGTAAGATT
TAGCTTATAAATCATTCAAATTGAAGTGAAAGATTACCAGGTCATTGTTAATGACTTAGT
CTATTAAGAATATATGTATTTTTGTAAAGGAGAAGCACTTGTAGATATTTAATCAGTACT
ATATGTCTGTTTTGCAGAAATAAAATGCTGCTTAGAGATTCTCTTTAAATACTTTTTATT
TTTGTGCTCAAATGTATTTTCTGTTTATCTATGGAGTGTTCTGTACAAAGCTGTATGATT
GTACTGTTGGGCTAGATACCTTTGTTTTTTAAAATCTGGTCTTAGCCAAGTATATTTGAC
CATGTTAAAAATAGTATCTTTGTTATTAAAAAATTCAATTGCAAAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               2-720, gnl|bosTau2|chr26 (6102769-6102084)
               

               
               2-720, gnl|Hg17|chr10 (93032496-93033210)
               

               
               2-720, gnl|Mm7|chr19 (36160245-36160876)
               


               
               1275-1559, gnl|bosTau2|chr12 (40157287-40157003)
               

               
               1275-1559, gnl|Hg17|chr10 (93033728-93033968)
               

               
               1275-1559, gnl|Mm7|chr5 (114506792-114507077)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-720, gnl|bosTau2|chr26 (6102769-6102084)
               

               
               2-720, gnl|Hg17|chr10 (93032496-93033210)
               

               
               2-720, gnl|Mm7|chr19 (36160245-36160876)
               


               
               1275-1559, gnl|bosTau2|chr12 (40157287-40157003)
               

               
               1275-1559, gnl|Hg17|chr10 (93033728-93033968)
               

               
               1275-1559, gnl|Mm7|chr5 (114506792-114507077)

Expressed library(ies): 29 entry(ies)

More info

Expressed library(ies): 29 entry(ies)

Help | Less info


               
               cmu (0.55918)
               

               
               rec (0.519211)
               

               
               lyg (0.399308)
               

               
               thg (0.380373)
               

               
               gul (0.355177)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.55918)
               

               
               rec (0.519211)
               

               
               lyg (0.399308)
               

               
               thg (0.380373)
               

               
               gul (0.355177)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	2-720, gnl\|bosTau2\|chr26 (6102769-6102084)
	2-720, gnl\|Hg17\|chr10 (93032496-93033210)
	2-720, gnl\|Mm7\|chr19 (36160245-36160876)

	1275-1559, gnl\|bosTau2\|chr12 (40157287-40157003)
	1275-1559, gnl\|Hg17\|chr10 (93033728-93033968)
	1275-1559, gnl\|Mm7\|chr5 (114506792-114507077)

	cmu (0.55918)
	rec (0.519211)
	lyg (0.399308)
	thg (0.380373)
	gul (0.355177)
	vin (0.332557)
	tbr (0.308356)
	isp (0.300752)
	bfe (0.299715)
	cte (0.29274)
	csk (0.281492)
	kid (0.259471)
	tra (0.246184)
	spc (0.226732)
	aor (0.195274)
	sag (0.182715)
	fty (0.17584)
	mcp (0.170648)
	eye (0.170503)
	nco (0.161734)
	fco (0.157208)
	ski (0.146735)
	lin (0.145603)
	spl (0.143184)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)
	cty (0.10408)
	nbm (0.0993246)