Ss1.1-Pig3-SRG8002L07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCCCGCAGCGTCCCCGCCGCCGTGCTGGGCTCGCTGGAGGAGGTCCGCGCGCTGTGCG CCCCGGAGCGCAGCTGACCGCCCGCCGCGCCCGGAGAAGTGCCTTCCCGGGGAAGCACAT GCGTCAGCTTCCGGGGTGCAGAGCGCGGTCCAGAGAGGTGCGAGCGAGCCAGGCGCCCGG GGCGTCCGCGCCCAGGGCTGTCGGCGCGGTGGCTGCGCGTCCCTGGACTGAACACATTTC ACTTAAGCTGTTGCGATCATACGACACGTGGATTGTAGTTTGTTGTGTCTTGGTCCAACA ACAAACACTTGAACTTAGCCCTTTTTTTGCTGCAGAAAGTGTCCTTTTAGTGGCTTTTTA AAATCAAGTGGCATTTTGTAATGAATTTATTATAAAAGCATTGATTTGGTTTCTGAGCCA GTTTGGACTTTGTGCCCGCAGGACTAACCAGGACAGAAACGGAGAGGCTACAGCAGAGCT AGGAGACCCTTCCCCTGTCTCAGCTGGAAACGGGCTACAGCGTTCTCCCCAAGGCCTGGT GTGCTGAGCAGAGGGGGCAGAACAGGGAGAGCCTTTAGAAGCTTCTTGGAATGCCTTTCT CCGTGTCTCTAAAGTTCCTTACAAATATTTAACTCTGTATCAGGAAAAGGAGAACCGCGG AGGAGAGCTGCGCGGGTGTGGCCGCCTGCCCGCGCGCGCAGCCCTGCGCGGGCCGTGTAC ATACGGACAGCCTATAATGTGTCTCACATTTGATGATATTCCACTTTGGGAATTTTAGTA TTTGTACATAGAAAATGGGTTTAATAACTCACCGTGGTCCTGATTTGTCTTATATTCATC ATTTCTTAAAACTCTTGTATGTGTTTTTATAATAAAAAAATAAAAGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCCCGCAGCGTCCCCGCCGCCGTGCTGGGCTCGCTGGAGGAGGTCCGCGCGCTGTGCG CCCCGGAGCGCAGCTGACCGCCCGCCGCGCCCGGAGAAGTGCCTTCCCGGGGAAGCACAT GCGTCAGCTTCCGGGGTGCAGAGCGCGGTCCAGAGAGGTGCGAGCGAGCCAGGCGCCCGG GGCGTCCGCGCCCAGGGCTGTCGGCGCGGTGGCTGCGCGTCCCTGGACTGAACACATTTC ACTTAAGCTGTTGCGATCATACGACACGTGGATTGTAGTTTGTTGTGTCTTGGTCCAACA ACAAACACTTGAACTTAGCCCTTTTTTTGCTGCAGAAAGTGTCCTTTTAGTGGCTTTTTA AAATCAAGTGGCATTTTGTAATGAATTTATTATAAAAGCATTGATTTGGTTTCTGAGCCA GTTTGGACTTTGTGCCCGCAGGACTAACCAGGACAGAAACGGAGAGGCTACAGCAGAGCT AGGAGACCCTTCCCCTGTCTCAGCTGGAAACGGGCTACAGCGTTCTCCCCAAGGCCTGGT GTGCTGAGCAGAGGGGGCAGAACAGGGAGAGCCTTTAGAAGCTTCTTGGAATGCCTTTCT CCGTGTCTCTAAAGTTCCTTACAAATATTTAACTCTGTATCAGGAAAAGGAGAACCGCGG AGGAGAGCTGCGCGGGTGTGGCCGCCTGCCCGCGCGCGCAGCCCTGCGCGGGCCGTGTAC ATACGGACAGCCTATAATGTGTCTCACATTTGATGATATTCCACTTTGGGAATTTTAGTA TTTGTACATAGAAAATGGGTTTAATAACTCACCGTGGTCCTGATTTGTCTTATATTCATC ATTTCTTAAAACTCTTGTATGTGTTTTTATAATAAAAAAATAAAAGTA |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 6-453, gnl|bosTau2|chr20 (40012644-40012194) | |
| 6-453, gnl|Hg17|chr5 (5542372-5542864) | |
| 6-453, gnl|Mm7|chr13 (67518718-67518192) | |
| 685-888, gnl|bosTau2|chr20 (40012049-40011842) | |
| 685-888, gnl|canFam2|chr34 (11057804-11058009) | |
| 685-888, gnl|canFam2|chr34 (11058017-11057794) | |
| 685-888, gnl|canFam2|chr34 (11057947-11057737) | |
| 685-888, gnl|dasNov1|scaffold_11384 (9351-9560) | |
| 685-888, gnl|dasNov1|scaffold_11384 (9563-9376) | |
| 685-888, gnl|dasNov1|scaffold_141516 (3970-3770) | |
| 685-888, gnl|echTel1|scaffold_239537 (5582-5787) | |
| 685-888, gnl|echTel1|scaffold_239537 (5650-5849) | |
| 685-888, gnl|echTel1|scaffold_289094 (40786-40972) | |
| 685-888, gnl|hg17|chr17 (50278945-50279208) | |
| 685-888, gnl|hg17|chr5 (1413110-1413352) | |
| 685-888, gnl|hg17|chr5 (5543190-5543396) | |
| 685-888, gnl|Hg17|chr5 (5543120-5543324) | |
| 685-888, gnl|loxAfr1|scaffold_23797 (21854-22043) | |
| 685-888, gnl|loxAfr1|scaffold_23797 (22052-21864) | |
| 685-888, gnl|loxAfr1|scaffold_23797 (21985-21791) | |
| 685-888, gnl|mm7|chr13 (67517715-67517919) | |
| 685-888, gnl|mm7|chr13 (67517938-67517712) | |
| 685-888, gnl|mm7|chr13 (67517855-67517655) | |
| 685-888, gnl|Mm7|chr13 (67517931-67517720) | |
| 685-888, gnl|monDom2|scaffold_4 (23229184-23228963) | |
| 685-888, gnl|monDom2|scaffold_4 (23228955-23229223) | |
| 685-888, gnl|monDom2|scaffold_4 (23229023-23229222) | |
| 685-888, gnl|oryCun1|scaffold_145891 (8447-8255) | |
| 685-888, gnl|oryCun1|scaffold_145891 (8245-8443) | |
| 685-888, gnl|oryCun1|scaffold_145891 (8304-8488) | |
| 685-888, gnl|panTro1|chr19_random (36000239-36000502) | |
| 685-888, gnl|panTro1|chr4 (1458849-1459072) | |
| 685-888, gnl|panTro1|chr4_random (36706489-36706693) | |
| 685-888, gnl|rheMac2|chr16 (39108881-39109144) | |
| 685-888, gnl|rheMac2|chr6 (1036731-1036989) | |
| 685-888, gnl|rheMac2|chr6 (5416220-5416426) | |
| 685-888, gnl|rn3|chr17 (2811116-2811314) | |
| 685-888, gnl|rn3|chr7 (3202766-3202568) | |
| 685-888, gnl|rn3|chr7 (3202507-3202758) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-453, gnl|bosTau2|chr20 (40012644-40012194) | |
| 6-453, gnl|Hg17|chr5 (5542372-5542864) | |
| 6-453, gnl|Mm7|chr13 (67518718-67518192) | |
| 685-888, gnl|bosTau2|chr20 (40012049-40011842) | |
| 685-888, gnl|canFam2|chr34 (11057804-11058009) | |
| 685-888, gnl|canFam2|chr34 (11058017-11057794) | |
| 685-888, gnl|canFam2|chr34 (11057947-11057737) | |
| 685-888, gnl|dasNov1|scaffold_11384 (9351-9560) | |
| 685-888, gnl|dasNov1|scaffold_11384 (9563-9376) | |
| 685-888, gnl|dasNov1|scaffold_141516 (3970-3770) | |
| 685-888, gnl|echTel1|scaffold_239537 (5582-5787) | |
| 685-888, gnl|echTel1|scaffold_239537 (5650-5849) | |
| 685-888, gnl|echTel1|scaffold_289094 (40786-40972) | |
| 685-888, gnl|hg17|chr17 (50278945-50279208) | |
| 685-888, gnl|hg17|chr5 (1413110-1413352) | |
| 685-888, gnl|hg17|chr5 (5543190-5543396) | |
| 685-888, gnl|Hg17|chr5 (5543120-5543324) | |
| 685-888, gnl|loxAfr1|scaffold_23797 (21854-22043) | |
| 685-888, gnl|loxAfr1|scaffold_23797 (22052-21864) | |
| 685-888, gnl|loxAfr1|scaffold_23797 (21985-21791) | |
| 685-888, gnl|mm7|chr13 (67517715-67517919) | |
| 685-888, gnl|mm7|chr13 (67517938-67517712) | |
| 685-888, gnl|mm7|chr13 (67517855-67517655) | |
| 685-888, gnl|Mm7|chr13 (67517931-67517720) | |
| 685-888, gnl|monDom2|scaffold_4 (23229184-23228963) | |
| 685-888, gnl|monDom2|scaffold_4 (23228955-23229223) | |
| 685-888, gnl|monDom2|scaffold_4 (23229023-23229222) | |
| 685-888, gnl|oryCun1|scaffold_145891 (8447-8255) | |
| 685-888, gnl|oryCun1|scaffold_145891 (8245-8443) | |
| 685-888, gnl|oryCun1|scaffold_145891 (8304-8488) | |
| 685-888, gnl|panTro1|chr19_random (36000239-36000502) | |
| 685-888, gnl|panTro1|chr4 (1458849-1459072) | |
| 685-888, gnl|panTro1|chr4_random (36706489-36706693) | |
| 685-888, gnl|rheMac2|chr16 (39108881-39109144) | |
| 685-888, gnl|rheMac2|chr6 (1036731-1036989) | |
| 685-888, gnl|rheMac2|chr6 (5416220-5416426) | |
| 685-888, gnl|rn3|chr17 (2811116-2811314) | |
| 685-888, gnl|rn3|chr7 (3202766-3202568) | |
| 685-888, gnl|rn3|chr7 (3202507-3202758) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.272628) | |
| eli (0.151814) |