Ss1.1-Pig3-SRG8002L15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGTCTGTCCACGAACCCCTTCAGGTCCCCGAAGAATACCTGAAGCCATACGACTTTAT CCAGAATAAGAATAGGCATTACTATGCAGGAATGGTGTCCCTCATGGATGAAGCAGTGGG AAATGTCACTGCCGCCTTAAAAAGCCGCGGGCTCTGGAACAACACGGTGTTCATCTTCTC CACAGATAACGGAGGGCAGACTCTGGCAGGGGGCAATAACTGGCCCCTTCGAGGAAGAAA GTGGAGCCTGTGGGAAGGAGGCGTGCGAGGGGTGGGCTTTGTGGCCGGCCCCTTGCTAAA AAGGAAAGGCGTGAAGAACCGGGAGCTTATCCACATTTCCGACTGGCTGCCCACCCTGGT GAAGCTGGCCGGGGGCAGCACGCATGGCACCAAGCCTCTGGATGGCTTTGATGTGTGGAA AACCATCAGTGAAGGAAGCCCGTCCCCCAGAATGGAGCTGCTGCACAATATCGACCCAAA CTTTGTAGATGTTTCACCATGTCTTGGGAACAGCACAGCTCCGGCAAAGGATGATTTTTC TCTTCCAGAGCATTCAGCCTTCAACACATCTGTCCATGCTGCAATTAGATACAGGAACTG GAAGCTCCTCACGGGCTACCCAGGCTGTGGCCACTGGTTTCCTCCACCGTCTCAATACAA TGTTTCTGAGATACCCTCCTCGGACCCACCGACCAAGACCACCTGGCTCTTTGACCTTGA GCGGGACCCAGAGGAGAGGCATGACCTGTCGAGGGACCACCCCCACATCGTCCAGCTGCT CCTCACCCGCCTGCAGTTCTACCAGAAGCACTCTGTGCCTGTGTACTTCCCGGCACAAGA CCCCCGCTGCGACCCCAAGGCCACTGGGGCTTGGGGTCCTTGGATGTAGGATTTCAAGGC AGCCTTGGGGGTGGGGAGAGCGGGAGAGGCGGCTAGAAAGCCTTCCTGGTACACGATGGA CTTCAGGGCTTTACTGGTGTGACTCTTGTCTCACTGATGCTCCCAACCTGGGTCCCCCCT GACCACTTCTCTCGCTCATAAACCACACTGAGGTATCTGATTTCGACCCCTAGGGCATTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGTCTGTCCACGAACCCCTTCAGGTCCCCGAAGAATACCTGAAGCCATACGACTTTAT CCAGAATAAGAATAGGCATTACTATGCAGGAATGGTGTCCCTCATGGATGAAGCAGTGGG AAATGTCACTGCCGCCTTAAAAAGCCGCGGGCTCTGGAACAACACGGTGTTCATCTTCTC CACAGATAACGGAGGGCAGACTCTGGCAGGGGGCAATAACTGGCCCCTTCGAGGAAGAAA GTGGAGCCTGTGGGAAGGAGGCGTGCGAGGGGTGGGCTTTGTGGCCGGCCCCTTGCTAAA AAGGAAAGGCGTGAAGAACCGGGAGCTTATCCACATTTCCGACTGGCTGCCCACCCTGGT GAAGCTGGCCGGGGGCAGCACGCATGGCACCAAGCCTCTGGATGGCTTTGATGTGTGGAA AACCATCAGTGAAGGAAGCCCGTCCCCCAGAATGGAGCTGCTGCACAATATCGACCCAAA CTTTGTAGATGTTTCACCATGTCTTGGGAACAGCACAGCTCCGGCAAAGGATGATTTTTC TCTTCCAGAGCATTCAGCCTTCAACACATCTGTCCATGCTGCAATTAGATACAGGAACTG GAAGCTCCTCACGGGCTACCCAGGCTGTGGCCACTGGTTTCCTCCACCGTCTCAATACAA TGTTTCTGAGATACCCTCCTCGGACCCACCGACCAAGACCACCTGGCTCTTTGACCTTGA GCGGGACCCAGAGGAGAGGCATGACCTGTCGAGGGACCACCCCCACATCGTCCAGCTGCT CCTCACCCGCCTGCAGTTCTACCAGAAGCACTCTGTGCCTGTGTACTTCCCGGCACAAGA CCCCCGCTGCGACCCCAAGGCCACTGGGGCTTGGGGTCCTTGGATGTAGGATTTCAAGGC AGCCTTGGGGGTGGGGAGAGCGGGAGAGGCGGCTAGAAAGCCTTCCTGGTACACGATGGA CTTCAGGGCTTTACTGGTGTGACTCTTGTCTCACTGATGCTCCCAACCTGGGTCCCCCCT GACCACTTCTCTCGCTCATAAACCACACTGAGGTATCTGATTTCGACCCCTAGGGCATTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 183-301, + strand, RNAz p=0.834285 | |
| 819-977, - strand, RNAz p=0.781152 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 183-301, + strand, RNAz p=0.834285 | |
| 819-977, - strand, RNAz p=0.781152 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-478, gnl|bosTau2|chr7 (38885720-38885243) | |
| 1-478, gnl|Hg17|chr5 (149657975-149657498) | |
| 1-478, gnl|Mm7|chr18 (61306190-61306667) | |
| 83-477, gnl|bosTau2|chr2 (49425099-49425493) | |
| 83-477, gnl|canFam2|chr32 (36560510-36560766) | |
| 83-477, gnl|danRer3|chr10 (35608856-35608600) | |
| 83-477, gnl|dasNov1|scaffold_197732 (998-742) | |
| 83-477, gnl|echTel1|scaffold_280598 (5507-5763) | |
| 83-477, gnl|fr1|chrUn (128153435-128153691) | |
| 83-477, gnl|galGal2|chr4 (57008756-57008500) | |
| 83-477, gnl|hg17|chr4 (115181549-115181805) | |
| 83-477, gnl|Hg17|chr4 (115181957-115181563) | |
| 83-477, gnl|loxAfr1|scaffold_104051 (5158-4902) | |
| 83-477, gnl|mm7|chr3 (126276725-126276469) | |
| 83-477, gnl|Mm7|chr3 (126276315-126276709) | |
| 83-477, gnl|monDom2|scaffold_9 (79821616-79821360) | |
| 83-477, gnl|oryCun1|scaffold_205350 (45579-45322) | |
| 83-477, gnl|panTro1|chr3 (131849493-131849749) | |
| 83-477, gnl|rheMac2|chr5 (106777524-106777780) | |
| 83-477, gnl|rn3|chr2 (223652426-223652170) | |
| 83-477, gnl|tetNig1|chrUn_random (127801558-127801814) | |
| 83-477, gnl|xenTro1|scaffold_635 (243777-243521) | |
| 183-429, gnl|bosTau2|chr10 (4003452-4003206) | |
| 183-429, gnl|Hg17|chr5 (78217409-78217163) | |
| 183-429, gnl|Mm7|chr13 (90925073-90925319) | |
| 620-1077, gnl|bosTau2|chr10 (3890610-3890174) | |
| 620-1077, gnl|Hg17|chr5 (78112245-78111822) | |
| 620-1077, gnl|Mm7|chr13 (91003451-91003877) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-478, gnl|bosTau2|chr7 (38885720-38885243) | |
| 1-478, gnl|Hg17|chr5 (149657975-149657498) | |
| 1-478, gnl|Mm7|chr18 (61306190-61306667) | |
| 83-477, gnl|bosTau2|chr2 (49425099-49425493) | |
| 83-477, gnl|canFam2|chr32 (36560510-36560766) | |
| 83-477, gnl|danRer3|chr10 (35608856-35608600) | |
| 83-477, gnl|dasNov1|scaffold_197732 (998-742) | |
| 83-477, gnl|echTel1|scaffold_280598 (5507-5763) | |
| 83-477, gnl|fr1|chrUn (128153435-128153691) | |
| 83-477, gnl|galGal2|chr4 (57008756-57008500) | |
| 83-477, gnl|hg17|chr4 (115181549-115181805) | |
| 83-477, gnl|Hg17|chr4 (115181957-115181563) | |
| 83-477, gnl|loxAfr1|scaffold_104051 (5158-4902) | |
| 83-477, gnl|mm7|chr3 (126276725-126276469) | |
| 83-477, gnl|Mm7|chr3 (126276315-126276709) | |
| 83-477, gnl|monDom2|scaffold_9 (79821616-79821360) | |
| 83-477, gnl|oryCun1|scaffold_205350 (45579-45322) | |
| 83-477, gnl|panTro1|chr3 (131849493-131849749) | |
| 83-477, gnl|rheMac2|chr5 (106777524-106777780) | |
| 83-477, gnl|rn3|chr2 (223652426-223652170) | |
| 83-477, gnl|tetNig1|chrUn_random (127801558-127801814) | |
| 83-477, gnl|xenTro1|scaffold_635 (243777-243521) | |
| 183-429, gnl|bosTau2|chr10 (4003452-4003206) | |
| 183-429, gnl|Hg17|chr5 (78217409-78217163) | |
| 183-429, gnl|Mm7|chr13 (90925073-90925319) | |
| 620-1077, gnl|bosTau2|chr10 (3890610-3890174) | |
| 620-1077, gnl|Hg17|chr5 (78112245-78111822) | |
| 620-1077, gnl|Mm7|chr13 (91003451-91003877) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bla (0.124347) | |
| eep (0.122564) |