Non-Coding RNA Search

Ss1.1-Pig3-SRG8002L16.5

Sequence:


               
               GGTGAAAATCCAAGAAACCCATGAATGTGATGCTTGTGGCGAAGCCTTCAATTGCCGAAT
ATCTCTTATTCAGCATCAAAAATTGCACACTACATGGATGCAGTAAATGTAGAAAGATAC
TTAAGTTCAGTTTGACTTGAGACTGGCTACCCAAGTGCAGTTTCACTATGGCTCAGTGTC
GAGTCAGATTTAGTGATAAAGCAGATTCTATTTGGCCTCAGGCACATGGTTTCTGAAGAT
TCTCTGAATAACAGGCAGCTGCCCACAGGTAGTTGAAGACTTCCATTACTCTTTATTTTG
ATAAATCATAGAGAAAGACTCAGTAATTTAAGCATCTTTCTTTAGTAAATCTTTCAGCAG
AGAGAAACCCAGGTTCAGAGCACTTAGTTATAATTAATAAAAGGAGAAGAACAAAGTTGC
GTTGCTGCAGGGGAGCTGGAAGCAGCTGATGTTAGAAAACTAGAATAATAATTCAGAGAC
CTCTGTCACCATGATAATATAGTGGTTTTTTTCAGTTCCACAATGTTTGGCTATGCATGG
CCAAAGTTCAGTAATTAAGCATATGATTACGGAGGAAACAAAGCCCCCATTTTTCTTTTT
AAACTGGCATCCAAAGTTTTTGTCATTGTTTAAGCCAGTTGTTTGGCATGTGGGTTAAAG
GCAGTTTCAATGCCATGTGGTTCTCAGATCCCTGAAATTAATGGACCATTAATTTTACAT
GTAAAGTAAATATAAAATGTAATTAACAAACCTAACAAAGGTGTTACCAAGGAACCTTTG
GGAGTGCCTTTTTTTGTTGTTTTCAAGATGGGCCCAAAAAGGTGGAGAAAGACACTATTC
TTTTTGTGACCTCCCATATGTGAAAGAAATTTGTAGTCCTAGACAGATAATTTTATTCCT
GCACTATTAGTAAGTAGCATGTGAAGGTGTAAATATTTTGATTACCAGGGGTTGGAAATA
AAAAGACCTGGAGTCTAAGCTAGGAAACTGACATATTTTGGTATTGCTTTGGTTTTTATG
GTAACTAGACTTTGCATGCAATTTTAAAATCCTTATTTCTGGTTCTAGGGCTTCCCTTAG
TTAATGGTTATTATAAACCTGTCAATTCATTTGTTCTAATCATTAAAACTGTTTTGTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGAAAATCCAAGAAACCCATGAATGTGATGCTTGTGGCGAAGCCTTCAATTGCCGAAT
ATCTCTTATTCAGCATCAAAAATTGCACACTACATGGATGCAGTAAATGTAGAAAGATAC
TTAAGTTCAGTTTGACTTGAGACTGGCTACCCAAGTGCAGTTTCACTATGGCTCAGTGTC
GAGTCAGATTTAGTGATAAAGCAGATTCTATTTGGCCTCAGGCACATGGTTTCTGAAGAT
TCTCTGAATAACAGGCAGCTGCCCACAGGTAGTTGAAGACTTCCATTACTCTTTATTTTG
ATAAATCATAGAGAAAGACTCAGTAATTTAAGCATCTTTCTTTAGTAAATCTTTCAGCAG
AGAGAAACCCAGGTTCAGAGCACTTAGTTATAATTAATAAAAGGAGAAGAACAAAGTTGC
GTTGCTGCAGGGGAGCTGGAAGCAGCTGATGTTAGAAAACTAGAATAATAATTCAGAGAC
CTCTGTCACCATGATAATATAGTGGTTTTTTTCAGTTCCACAATGTTTGGCTATGCATGG
CCAAAGTTCAGTAATTAAGCATATGATTACGGAGGAAACAAAGCCCCCATTTTTCTTTTT
AAACTGGCATCCAAAGTTTTTGTCATTGTTTAAGCCAGTTGTTTGGCATGTGGGTTAAAG
GCAGTTTCAATGCCATGTGGTTCTCAGATCCCTGAAATTAATGGACCATTAATTTTACAT
GTAAAGTAAATATAAAATGTAATTAACAAACCTAACAAAGGTGTTACCAAGGAACCTTTG
GGAGTGCCTTTTTTTGTTGTTTTCAAGATGGGCCCAAAAAGGTGGAGAAAGACACTATTC
TTTTTGTGACCTCCCATATGTGAAAGAAATTTGTAGTCCTAGACAGATAATTTTATTCCT
GCACTATTAGTAAGTAGCATGTGAAGGTGTAAATATTTTGATTACCAGGGGTTGGAAATA
AAAAGACCTGGAGTCTAAGCTAGGAAACTGACATATTTTGGTATTGCTTTGGTTTTTATG
GTAACTAGACTTTGCATGCAATTTTAAAATCCTTATTTCTGGTTCTAGGGCTTCCCTTAG
TTAATGGTTATTATAAACCTGTCAATTCATTTGTTCTAATCATTAAAACTGTTTTGTTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               697-816, + strand, RNAz p=0.80235

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               697-816, + strand, RNAz p=0.80235

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of U75454, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of U75454, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1140, gnl|bosTau2|chr8 (48406287-48405196)
               

               
               1-1140, gnl|Hg17|chr9 (101251381-101252489)
               

               
               1-1140, gnl|Mm7|chr4 (49544434-49545516)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1140, gnl|bosTau2|chr8 (48406287-48405196)
               

               
               1-1140, gnl|Hg17|chr9 (101251381-101252489)
               

               
               1-1140, gnl|Mm7|chr4 (49544434-49545516)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               kid (0.129735)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)
               

               
               ret (0.128733)

	1-1140, gnl\|bosTau2\|chr8 (48406287-48405196)
	1-1140, gnl\|Hg17\|chr9 (101251381-101252489)
	1-1140, gnl\|Mm7\|chr4 (49544434-49545516)