Ss1.1-Pig3-SRG8002M02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGCATCACCCCAACATCATCAACCTTCTGGGAGCCTGTGAGAACCGAGGTTACTTGTA TATCGCTATCGAATATGCCCCCTATGGGAACCTGCTCGATTTTCTGCGGAAGAGCCGCGT TCTGGAAACTGACCCAGCTTTTGCCCGGGAACATGGAACAGCCTCCACCCTCAGCTCCCG GCAGCTGCTGCGTTTTGCCAGTGATGCTGCCAATGGCATGCAGTACCTGAGTGAGAAACA GTTCATCCACAGGGACCTGGCTGCCCGGAATGTGCTGGTTGGAGAGAACCTGGCCTCCAA GATCGCAGACTTCGGCCTTTCTCGAGGGGAGGAGGTTTACGTGAAGAAGACGATGGGGCG TCTCCCCGTGCGCTGGATGGCCATCGAGTCCCTGAACTACAGCGTCTATACCACCAAGAG TGACGTTTGGTCCTTTGGGGTCCTCCTCTGGGAGATCGTGAGCCTCGGGGGCACCCCGTA CTGCGGCATGACCTGCGCCGAGCTCTACGAGAAGCTGCCACAGGGCTACCGCATGGAGCA GCCTCGCAACTGTGACGATGAAGTGTACGAGCTGATGCGCCAGTGCTGGCGGGACCGTCC CTACGAGCGACCTCCCTTTGCCCAGATCGCGCTGCAGCTGGGCCGAATGCTGGAAGCCAG GAAGGCCTACGTAAACATGTCACTGTTTGAGAACTTCACGTACGCGGGCATCGATGCCAC GGCGGAGGAGGCCTGAGCCGCTGTCAGGCCAGAACCTGGCTCTGCTGGCCAGAGCAGACT CGGCTCTCCAACCTGTGACTTCTGCTCCTTGTCGCCTGAACTGCCTCAAGGAATTGTTTT TTAACTTAAGGGAAAAAAAGAGGGATCTGGGGATGGGATGGGATGGGGGGCGTTGGGGCC TCAACCTTTGCCATTGCTCCTGCTGCCCCCGCATTGCTTACCCCTCCCCTCACACCTCTC CTCCTAGTTCAGCTGCTGCACGTTTGTGCTCTTCAGCTCCCTGCACTCGAACCCCTGCTG CTTCAGCCCCTCCAGCCAAGCCAGCCCTCACACCCCTAACAAGTCCTGTTCCGCTGCGCC CCACCCCCAGCCTTGTAATCAGAACAAATAAATGTCCTGAGACGCTCAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGCATCACCCCAACATCATCAACCTTCTGGGAGCCTGTGAGAACCGAGGTTACTTGTA TATCGCTATCGAATATGCCCCCTATGGGAACCTGCTCGATTTTCTGCGGAAGAGCCGCGT TCTGGAAACTGACCCAGCTTTTGCCCGGGAACATGGAACAGCCTCCACCCTCAGCTCCCG GCAGCTGCTGCGTTTTGCCAGTGATGCTGCCAATGGCATGCAGTACCTGAGTGAGAAACA GTTCATCCACAGGGACCTGGCTGCCCGGAATGTGCTGGTTGGAGAGAACCTGGCCTCCAA GATCGCAGACTTCGGCCTTTCTCGAGGGGAGGAGGTTTACGTGAAGAAGACGATGGGGCG TCTCCCCGTGCGCTGGATGGCCATCGAGTCCCTGAACTACAGCGTCTATACCACCAAGAG TGACGTTTGGTCCTTTGGGGTCCTCCTCTGGGAGATCGTGAGCCTCGGGGGCACCCCGTA CTGCGGCATGACCTGCGCCGAGCTCTACGAGAAGCTGCCACAGGGCTACCGCATGGAGCA GCCTCGCAACTGTGACGATGAAGTGTACGAGCTGATGCGCCAGTGCTGGCGGGACCGTCC CTACGAGCGACCTCCCTTTGCCCAGATCGCGCTGCAGCTGGGCCGAATGCTGGAAGCCAG GAAGGCCTACGTAAACATGTCACTGTTTGAGAACTTCACGTACGCGGGCATCGATGCCAC GGCGGAGGAGGCCTGAGCCGCTGTCAGGCCAGAACCTGGCTCTGCTGGCCAGAGCAGACT CGGCTCTCCAACCTGTGACTTCTGCTCCTTGTCGCCTGAACTGCCTCAAGGAATTGTTTT TTAACTTAAGGGAAAAAAAGAGGGATCTGGGGATGGGATGGGATGGGGGGCGTTGGGGCC TCAACCTTTGCCATTGCTCCTGCTGCCCCCGCATTGCTTACCCCTCCCCTCACACCTCTC CTCCTAGTTCAGCTGCTGCACGTTTGTGCTCTTCAGCTCCCTGCACTCGAACCCCTGCTG CTTCAGCCCCTCCAGCCAAGCCAGCCCTCACACCCCTAACAAGTCCTGTTCCGCTGCGCC CCACCCCCAGCCTTGTAATCAGAACAAATAAATGTCCTGAGACGCTCAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 85-204, - strand, RNAz p=0.584485 | |
| 120-234, - strand, RNAz p=0.545574 | |
| 853-969, + strand, RNAz p=0.994438 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 85-204, - strand, RNAz p=0.584485 | |
| 120-234, - strand, RNAz p=0.545574 | |
| 853-969, + strand, RNAz p=0.994438 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC038239, + |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 46-241, gnl|bosTau2|chr3 (67636936-67636741) | |
| 46-241, gnl|canFam2|chr15 (19855446-19855286) | |
| 46-241, gnl|danRer3|chrUn (16993819-16993957) | |
| 46-241, gnl|dasNov1|scaffold_23692 (14331-14186) | |
| 46-241, gnl|echTel1|scaffold_310577 (17083-16924) | |
| 46-241, gnl|fr1|chrUn (115970950-115971099) | |
| 46-241, gnl|galGal2|chr8 (19967094-19967213) | |
| 46-241, gnl|hg17|chr1 (43452604-43452763) | |
| 46-241, gnl|Hg17|chr1 (43452641-43452836) | |
| 46-241, gnl|loxAfr1|scaffold_62621 (4313-4175) | |
| 46-241, gnl|mm7|chr4 (117852095-117851938) | |
| 46-241, gnl|Mm7|chr4 (117852058-117851863) | |
| 46-241, gnl|monDom2|scaffold_87 (200726-200607) | |
| 46-241, gnl|oryCun1|scaffold_185440 (4741-4882) | |
| 46-241, gnl|panTro1|chr1 (44431217-44431376) | |
| 46-241, gnl|rheMac2|chr1 (46231200-46231359) | |
| 46-241, gnl|rn3|chr5 (138955605-138955446) | |
| 46-241, gnl|tetNig1|chr1 (16284508-16284638) | |
| 46-241, gnl|xenTro1|scaffold_1 (5494924-5495082) | |
| 467-567, gnl|bosTau2|chr8 (10399370-10399270) | |
| 467-567, gnl|canFam2|chr11 (48404592-48404708) | |
| 467-567, gnl|danRer3|chrUn (16996843-16996955) | |
| 467-567, gnl|dasNov1|scaffold_3681 (113948-114064) | |
| 467-567, gnl|fr1|chrUn (115972539-115972649) | |
| 467-567, gnl|galGal2|chrZ_random (2698381-2698494) | |
| 467-567, gnl|hg17|chr9 (27210037-27210153) | |
| 467-567, gnl|Hg17|chr9 (27210046-27210146) | |
| 467-567, gnl|loxAfr1|scaffold_3983 (82099-81983) | |
| 467-567, gnl|mm7|chr4 (94258019-94258135) | |
| 467-567, gnl|Mm7|chr4 (94258028-94258128) | |
| 467-567, gnl|monDom2|scaffold_19 (25078805-25078920) | |
| 467-567, gnl|oryCun1|scaffold_198603 (245977-245861) | |
| 467-567, gnl|panTro1|chr11 (27741580-27741696) | |
| 467-567, gnl|rheMac2|chr15 (49873926-49873810) | |
| 467-567, gnl|rn3|chr5 (115192773-115192889) | |
| 467-567, gnl|tetNig1|chr1 (16286104-16286220) | |
| 467-567, gnl|xenTro1|scaffold_155 (823088-822972) | |
| 663-1127, gnl|bosTau2|chr3 (67632400-67631932) | |
| 663-1127, gnl|Hg17|chr1 (43457413-43457870) | |
| 663-1127, gnl|Mm7|chr4 (117848033-117847628) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-241, gnl|bosTau2|chr3 (67636936-67636741) | |
| 46-241, gnl|canFam2|chr15 (19855446-19855286) | |
| 46-241, gnl|danRer3|chrUn (16993819-16993957) | |
| 46-241, gnl|dasNov1|scaffold_23692 (14331-14186) | |
| 46-241, gnl|echTel1|scaffold_310577 (17083-16924) | |
| 46-241, gnl|fr1|chrUn (115970950-115971099) | |
| 46-241, gnl|galGal2|chr8 (19967094-19967213) | |
| 46-241, gnl|hg17|chr1 (43452604-43452763) | |
| 46-241, gnl|Hg17|chr1 (43452641-43452836) | |
| 46-241, gnl|loxAfr1|scaffold_62621 (4313-4175) | |
| 46-241, gnl|mm7|chr4 (117852095-117851938) | |
| 46-241, gnl|Mm7|chr4 (117852058-117851863) | |
| 46-241, gnl|monDom2|scaffold_87 (200726-200607) | |
| 46-241, gnl|oryCun1|scaffold_185440 (4741-4882) | |
| 46-241, gnl|panTro1|chr1 (44431217-44431376) | |
| 46-241, gnl|rheMac2|chr1 (46231200-46231359) | |
| 46-241, gnl|rn3|chr5 (138955605-138955446) | |
| 46-241, gnl|tetNig1|chr1 (16284508-16284638) | |
| 46-241, gnl|xenTro1|scaffold_1 (5494924-5495082) | |
| 467-567, gnl|bosTau2|chr8 (10399370-10399270) | |
| 467-567, gnl|canFam2|chr11 (48404592-48404708) | |
| 467-567, gnl|danRer3|chrUn (16996843-16996955) | |
| 467-567, gnl|dasNov1|scaffold_3681 (113948-114064) | |
| 467-567, gnl|fr1|chrUn (115972539-115972649) | |
| 467-567, gnl|galGal2|chrZ_random (2698381-2698494) | |
| 467-567, gnl|hg17|chr9 (27210037-27210153) | |
| 467-567, gnl|Hg17|chr9 (27210046-27210146) | |
| 467-567, gnl|loxAfr1|scaffold_3983 (82099-81983) | |
| 467-567, gnl|mm7|chr4 (94258019-94258135) | |
| 467-567, gnl|Mm7|chr4 (94258028-94258128) | |
| 467-567, gnl|monDom2|scaffold_19 (25078805-25078920) | |
| 467-567, gnl|oryCun1|scaffold_198603 (245977-245861) | |
| 467-567, gnl|panTro1|chr11 (27741580-27741696) | |
| 467-567, gnl|rheMac2|chr15 (49873926-49873810) | |
| 467-567, gnl|rn3|chr5 (115192773-115192889) | |
| 467-567, gnl|tetNig1|chr1 (16286104-16286220) | |
| 467-567, gnl|xenTro1|scaffold_155 (823088-822972) | |
| 663-1127, gnl|bosTau2|chr3 (67632400-67631932) | |
| 663-1127, gnl|Hg17|chr1 (43457413-43457870) | |
| 663-1127, gnl|Mm7|chr4 (117848033-117847628) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| amn (0.417711) | |
| pla (0.267344) | |
| eep (0.122564) | |
| cly (0.120642) | |
| jca (0.11396) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| pla (0.267344) | |
| eep (0.122564) | |
| cly (0.120642) | |
| jca (0.11396) |