Non-Coding RNA Search

Ss1.1-Pig3-SRG8002M15.3

Sequence:


               
               ATCTCTTCTGAGTTAGGAGCAGTCCTGCAGTCTGAACTGCATTGGTCCAGACCATCTGAT
CCCCGGCATTCTTGAATGAACGACAACGGGGGGCTTTTAGTAAAGGTTATTAAGATAATC
ATCGTCGTAATTTGATATGTTAATATTCTTTTTAGTACATTTCAAGCACAATGATCCTAC
TTGTCCATCCAGTTTTGTTTTTTATAAGTTGCTTACATGATGCATGGCTAACTGGTTAAT
TTTCTCTCTAGAGACTTTGAGATTCCTTTGAGACAAGATTGAGAAAGAGCCGTTTGGCGT
GGCCTTTAGAAACATCAATATCATCACGACCAACAGACTTTTAGATTAAGCTGCTACTGA
ATTAATAAAATCCCCGTGAAGTAGAGTTACAGGACTAGATGTACAACTGGCCGAGTACTA
CAGAAGGAAGACAGGTGAAAAAAGTCAGTTGCACAGGTCTCTTCAAGCCAGCTTGTTGCT
AAGGTTAAGGACCCTTGTTTTCGTCACTGAGGATGGCTGGAACCCAGGAGGGACTCTGTT
AGGCGTGAGGAGGGGACGTGCCAAAATTGCCCAGACAGTGTGACTTGTCACGAGGCAGGA
CACACACTTTCAAATCCAGCATCTCCCTGGCAGGTGAGTCTCAAAGATCCCACAGAGACC
CAGAGTCGGTCGAGGGTACAGAGGAAGGCTGGGGGGCGCTGGGGGGCCTGGGCGAAGAGC
TCTGGTGCCCGAGGGGGCGTCCGCTGACCCTCAGCAAGTCCGGGGGACCTGATGCTACCT
GGGCACTTAGAGGCCAGGCCCGGTCTTCCGCTCTCTTGCTGGGGGACCTCAGGATGAGAA
GAGTGTCCCAGACGGGGCCTGTCTGCCACTTGGAGGTGACCCCGCGCAGGCGCGCTGGCT
TGTCCTCAGGCGTCTTGGACTGGAGTCCAATGGAAAGGTCAGCAACTTACTATTAAAATG
GTTGTTTCGGATCATATTGATCTCTTTCCTTTCTCCTTTTGTCCTTTCACTGTATGACTT
GAATCAGTTTTGATTCTATTTGTAAGTTTCTCGTCGCTAGGAGCCTGCCACTTCCGTTGC
ATTTTCTTTGGCAGTATGTAGGGATTCAGCGTCCTGGTTTTTCACCCTCCTGCAGGCACT
GTGGGGTTTCGAGGGCCAGCGGATCCATTTCACGTCCCTTGCTGCATGATGGTCAGTAGC
TGATCTGTTCCGGCATTCACTCCCGGATTGAGTTTCTGTGTTTGAAGTATGTGCATATGT
GCTTTCCAGAATAAAACATCGGAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTCTTCTGAGTTAGGAGCAGTCCTGCAGTCTGAACTGCATTGGTCCAGACCATCTGAT
CCCCGGCATTCTTGAATGAACGACAACGGGGGGCTTTTAGTAAAGGTTATTAAGATAATC
ATCGTCGTAATTTGATATGTTAATATTCTTTTTAGTACATTTCAAGCACAATGATCCTAC
TTGTCCATCCAGTTTTGTTTTTTATAAGTTGCTTACATGATGCATGGCTAACTGGTTAAT
TTTCTCTCTAGAGACTTTGAGATTCCTTTGAGACAAGATTGAGAAAGAGCCGTTTGGCGT
GGCCTTTAGAAACATCAATATCATCACGACCAACAGACTTTTAGATTAAGCTGCTACTGA
ATTAATAAAATCCCCGTGAAGTAGAGTTACAGGACTAGATGTACAACTGGCCGAGTACTA
CAGAAGGAAGACAGGTGAAAAAAGTCAGTTGCACAGGTCTCTTCAAGCCAGCTTGTTGCT
AAGGTTAAGGACCCTTGTTTTCGTCACTGAGGATGGCTGGAACCCAGGAGGGACTCTGTT
AGGCGTGAGGAGGGGACGTGCCAAAATTGCCCAGACAGTGTGACTTGTCACGAGGCAGGA
CACACACTTTCAAATCCAGCATCTCCCTGGCAGGTGAGTCTCAAAGATCCCACAGAGACC
CAGAGTCGGTCGAGGGTACAGAGGAAGGCTGGGGGGCGCTGGGGGGCCTGGGCGAAGAGC
TCTGGTGCCCGAGGGGGCGTCCGCTGACCCTCAGCAAGTCCGGGGGACCTGATGCTACCT
GGGCACTTAGAGGCCAGGCCCGGTCTTCCGCTCTCTTGCTGGGGGACCTCAGGATGAGAA
GAGTGTCCCAGACGGGGCCTGTCTGCCACTTGGAGGTGACCCCGCGCAGGCGCGCTGGCT
TGTCCTCAGGCGTCTTGGACTGGAGTCCAATGGAAAGGTCAGCAACTTACTATTAAAATG
GTTGTTTCGGATCATATTGATCTCTTTCCTTTCTCCTTTTGTCCTTTCACTGTATGACTT
GAATCAGTTTTGATTCTATTTGTAAGTTTCTCGTCGCTAGGAGCCTGCCACTTCCGTTGC
ATTTTCTTTGGCAGTATGTAGGGATTCAGCGTCCTGGTTTTTCACCCTCCTGCAGGCACT
GTGGGGTTTCGAGGGCCAGCGGATCCATTTCACGTCCCTTGCTGCATGATGGTCAGTAGC
TGATCTGTTCCGGCATTCACTCCCGGATTGAGTTTCTGTGTTTGAAGTATGTGCATATGT
GCTTTCCAGAATAAAACATCGGAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               792-901, - strand, RNAz p=0.902391
               

               
               942-1059, - strand, RNAz p=0.505348

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               792-901, - strand, RNAz p=0.902391
               

               
               942-1059, - strand, RNAz p=0.505348

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               59-694, gnl|bosTau2|chr25 (24154213-24154870)
               

               
               59-694, gnl|Hg17|chr7 (65866426-65867098)
               


               
               714-1288, gnl|bosTau2|chr25 (24154860-24155443)
               

               
               714-1288, gnl|Hg17|chr7 (65867079-65867688)
               

               
               714-1288, gnl|Mm7|chr5 (129480975-129481488)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-694, gnl|bosTau2|chr25 (24154213-24154870)
               

               
               59-694, gnl|Hg17|chr7 (65866426-65867098)
               


               
               714-1288, gnl|bosTau2|chr25 (24154860-24155443)
               

               
               714-1288, gnl|Hg17|chr7 (65867079-65867688)
               

               
               714-1288, gnl|Mm7|chr5 (129480975-129481488)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               elu (0.770713)
               

               
               cag (0.302389)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               med (0.116252)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.770713)
               

               
               cag (0.302389)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               med (0.116252)

	792-901, - strand, RNAz p=0.902391
	942-1059, - strand, RNAz p=0.505348

	59-694, gnl\|bosTau2\|chr25 (24154213-24154870)
	59-694, gnl\|Hg17\|chr7 (65866426-65867098)

	714-1288, gnl\|bosTau2\|chr25 (24154860-24155443)
	714-1288, gnl\|Hg17\|chr7 (65867079-65867688)
	714-1288, gnl\|Mm7\|chr5 (129480975-129481488)

	elu (0.770713)
	cag (0.302389)
	mas (0.210305)
	nbm (0.198649)
	fcc (0.197785)
	nlu (0.191681)
	fty (0.17584)
	ton (0.1755)
	cut (0.169924)
	hyp (0.142837)
	lnt (0.142308)
	csk (0.140746)
	hlv (0.139256)
	ute (0.132784)
	ova (0.129132)
	bla (0.124347)
	cly (0.120642)
	med (0.116252)