Non-Coding RNA Search

Ss1.1-Pig3-SRG8002M20.3

Sequence:


               
               CCAGCAGTCGAATCGGAGCTGTAGCCGCTGGCCTACACCACAGCCATAGCAACGCGGGAT
CCGAGCCTCCTCTGCAACCGACACCACAGCTCACGGCAACACCACACCGGAGCCTCAACC
CACTGAGTGAGGCCAGGGATCGAACTCACACCCTCATGGATACTAGTCGGGTTCAGTAAC
CACTGAGCCACAATGGGAACTCCTGCTCTAACTTTAAAAGCTTGTGCTGGGGACACTGGT
TAAAACATTTGAAAAGTTGGCTCTCCTTAGGAGGGAAAGACACCTCCCCAAAGAAGAATC
TCTATGTCTTTTCCTAGCCCATCAATAAGTCATTTTTGTAATAGATCAAAAGCAAATGTT
CTCAATTAGAAGAGTTTAGTGGCTGTTGGTAGTGATAAAATAATAATCCTACTAGTATCC
AAAGGTTTCTATTTTGTTTTTCAGGGATATTTTAACATTGATGAATAAAAATAGTTCCAT
TTGGGAGGTCATTCCCGAAGATGTCGGCTTTTGTTCTCCTGCTGCTCTGAACCTTTGTAT
GTTCCGTCAAATATGTCACAGTGCTGCTGTATCTAGATCGAACCACTGTTGTTGTTTTTT
TAAGAGAAATAAATTCCTTAATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGCAGTCGAATCGGAGCTGTAGCCGCTGGCCTACACCACAGCCATAGCAACGCGGGAT
CCGAGCCTCCTCTGCAACCGACACCACAGCTCACGGCAACACCACACCGGAGCCTCAACC
CACTGAGTGAGGCCAGGGATCGAACTCACACCCTCATGGATACTAGTCGGGTTCAGTAAC
CACTGAGCCACAATGGGAACTCCTGCTCTAACTTTAAAAGCTTGTGCTGGGGACACTGGT
TAAAACATTTGAAAAGTTGGCTCTCCTTAGGAGGGAAAGACACCTCCCCAAAGAAGAATC
TCTATGTCTTTTCCTAGCCCATCAATAAGTCATTTTTGTAATAGATCAAAAGCAAATGTT
CTCAATTAGAAGAGTTTAGTGGCTGTTGGTAGTGATAAAATAATAATCCTACTAGTATCC
AAAGGTTTCTATTTTGTTTTTCAGGGATATTTTAACATTGATGAATAAAAATAGTTCCAT
TTGGGAGGTCATTCCCGAAGATGTCGGCTTTTGTTCTCCTGCTGCTCTGAACCTTTGTAT
GTTCCGTCAAATATGTCACAGTGCTGCTGTATCTAGATCGAACCACTGTTGTTGTTTTTT
TAAGAGAAATAAATTCCTTAATGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               216-314, - strand, RNAz p=0.623174

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               216-314, - strand, RNAz p=0.623174

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               207-624, gnl|bosTau2|chr26 (25758094-25757672)
               

               
               207-624, gnl|canFam2|chr28 (32636457-32637061)
               

               
               207-624, gnl|dasNov1|scaffold_2728 (40439-39827)
               

               
               207-624, gnl|galGal2|chr6 (29226292-29226974)
               

               
               207-624, gnl|hg17|chr10 (121208535-121209208)
               

               
               207-624, gnl|Hg17|chr10 (121208824-121209242)
               

               
               207-624, gnl|loxAfr1|scaffold_5305 (102744-102095)
               

               
               207-624, gnl|mm7|chr19 (61018063-61018646)
               

               
               207-624, gnl|Mm7|chr19 (61018272-61018675)
               

               
               207-624, gnl|monDom2|scaffold_14 (40856198-40855480)
               

               
               207-624, gnl|oryCun1|scaffold_198646 (47853-47318)
               

               
               207-624, gnl|panTro1|chr8 (123478381-123479052)
               

               
               207-624, gnl|rheMac2|chr9 (119083568-119084239)
               

               
               207-624, gnl|rn3|chr1 (267907198-267907762)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               207-624, gnl|bosTau2|chr26 (25758094-25757672)
               

               
               207-624, gnl|canFam2|chr28 (32636457-32637061)
               

               
               207-624, gnl|dasNov1|scaffold_2728 (40439-39827)
               

               
               207-624, gnl|galGal2|chr6 (29226292-29226974)
               

               
               207-624, gnl|hg17|chr10 (121208535-121209208)
               

               
               207-624, gnl|Hg17|chr10 (121208824-121209242)
               

               
               207-624, gnl|loxAfr1|scaffold_5305 (102744-102095)
               

               
               207-624, gnl|mm7|chr19 (61018063-61018646)
               

               
               207-624, gnl|Mm7|chr19 (61018272-61018675)
               

               
               207-624, gnl|monDom2|scaffold_14 (40856198-40855480)
               

               
               207-624, gnl|oryCun1|scaffold_198646 (47853-47318)
               

               
               207-624, gnl|panTro1|chr8 (123478381-123479052)
               

               
               207-624, gnl|rheMac2|chr9 (119083568-119084239)
               

               
               207-624, gnl|rn3|chr1 (267907198-267907762)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               aor (0.195274)
               

               
               che (0.136314)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               che (0.136314)

	207-624, gnl\|bosTau2\|chr26 (25758094-25757672)
	207-624, gnl\|canFam2\|chr28 (32636457-32637061)
	207-624, gnl\|dasNov1\|scaffold_2728 (40439-39827)
	207-624, gnl\|galGal2\|chr6 (29226292-29226974)
	207-624, gnl\|hg17\|chr10 (121208535-121209208)
	207-624, gnl\|Hg17\|chr10 (121208824-121209242)
	207-624, gnl\|loxAfr1\|scaffold_5305 (102744-102095)
	207-624, gnl\|mm7\|chr19 (61018063-61018646)
	207-624, gnl\|Mm7\|chr19 (61018272-61018675)
	207-624, gnl\|monDom2\|scaffold_14 (40856198-40855480)
	207-624, gnl\|oryCun1\|scaffold_198646 (47853-47318)
	207-624, gnl\|panTro1\|chr8 (123478381-123479052)
	207-624, gnl\|rheMac2\|chr9 (119083568-119084239)
	207-624, gnl\|rn3\|chr1 (267907198-267907762)