Ss1.1-Pig3-SRG8002N03.3
|
AGTTCACTCCCTGCTCAGTGCCTGGGGCCTTTGGTGTCGCCACGGGCACAGTGCCATTCA
CACCATGGCTTGCGTCTCGACTGCCCCACTTCCTCTCGAGAAACGTGGGTCCTTGGAACA
TCTTTAGTGTCGGAGCTCGGGCCGCAGGCAGCTCCGCGGCGGCGGCAGAACAGGACCTCT
GGAATGGATGGACTCTTCCTGAGCAGCTTGGCTAATTTGCAGCAGCTGGACAATGTTCCT
CTTTAATATCTGTCTGTCAGCATAACCATCACATCGTTTCACTTTGGTGGCAGGGACTCA
CAACTCCGAATTCTGTATAGAAAAGCACCTGGATCCAAGTCTTACAATGGCTTCAAGACA
ACCAGAAGTGCCTGCTCTTGAGCCTAGTGGGCCTCTAGGCAAGATGTCCCTGCCCATCGG
GATGTACCGCCGGGCATTCAGCTATGATGATGCCCTCGAGGACCCTGCGCCCATGACTCC
TCCTCCATCGGACATGGGCAGCATCCCCTGGAAGCCAGTGATTCCAGAGCGCAAGTATCA
GCACCTCGCCAAGGTGGAGGAAGGGGATGCCAGCGCCTCCTCCCCTGCTGTACCCCTGCC
ACCGGCCACTGACAGTGCGGACAAGGTCCCTGTGGTGAAGGCTAAAGCTACCCATGTCAT
CATGAGTTCTCTGATCACAAAACAGACCCAAGAGAGCATTCAGCGTTTTGAGCAACAGGC
AGGGCTGAGAGATGCTGGCTACACACCCCACAAGGGCCTTACCACCGAGGAGACCAACTA
CCTTCGAGTGGCAGAAGCGCTCCACAAACTAAAGCTGCAGAGTGGAGAGATAACGAGAGA
GGAGAAGCAGCCGGCCTCCACCCAGTCCACCCCGAGCAGCAGCCCTCACTCTTCCCCAAA
GCAGAAGTCCCGAGGCTGGTTCACTTCTGGTTCTTCCATAGCCTTACCTGGTCCCAATCT
CAGCGCCATGGATTCTGGAAGCGGGGATAAAGACAGAAGCTCAGCAGATAAGTGGGGTCT
CTTTGCACCAAGATCCCTCCAGAAGTCGGATTCAGGAAGTTTTGCCACTCAGGTGTACAG
AGGAGCCCAGAAACCTTCTCCAATGGAACTGATTCGTGTGCAGGCCACCCGAATGGCTGA
GGACCCAGCAACATTCCAGCCGCCCAAGATGGACATCCCAGTGATAGAAGGGAAGAAACA
GCTGCCTCGGACCCACAATCTCAAACCCCGGGACTTGAATGTTCTCACGCCCACTGGCTT
CTAGAGCCATCTGTTCCAGGGACTCTGGCTAGAGCGTGTCTTGTGCCCTGCTCCCTTTAC
CTTGGCTCTGACATAGGAAAGGTTTTGTTTTGTCTTTTTAAAAATCTCTCAAATGGAGGC
TGGAGCTGGAGACATAATCCGTCTTTGAGAAACAGTGTGCAAAGCTTGTCCTTGTGTGGA
AGAAGCCATCTCGTATCGCTTTAGTGTAGACAAAATAATGTCAGTAGGTGTACGGGGACC
TCATTACTTATTTTTGGTATCCTTTATATACACAGAACAAATGATGTTTGTGTTGGTCCA
AAACCAAGGCTTCTTGATTCCTTTGCCATGCTCCATGTGAGCATGGACACATGGGGGCCT
TCACTGACTAGGGTAGACAACTTTGGTCTTCCTGGCTGTGCTGGCACCATGTGCTCCAGC
CTTGCTAGTGAGGGGGACCCGAGATCTGTTGAGGTCTGGGTACACTTAAGAGGGAGACTT
GGCAGGGATCCTCTTTTCTGAGCTGAAACTGGAGTCTGTGCTTTTAGGAAGATGCTGAGG
ATCACGTGGTTCTGTGGCCAGTACCTAGTGCAGTAGCTCTTAGGCCAGTGCTATTGGAGG
GATGCTTCTCTTTTATGTGTCACTGAACAAAACACTAGTCCTGTATCCTTTGTTGCACTT
TAAGGTGAGATTAGTTTAACTCATTTGGTCGAAGACTTCCTAAGGGAGAAAATTCAGTCT
ACTGGTTTGGTAATAGATAGATGGGTATTAAACTTTCTGCAAACTATTGCCTTTGGAAGC
AAACTTGCCTTTGGAATAGATAAGCAATGAGATCTTGCTGTGTAGCACTGGGATCTATAT
CTAGTCACCTATGATGGAGCATGATAATGTGAGAAAAAAGAATGTATACATGTATGTGTA
ACTGGGTCACCTTGCCGTACAGTAGAAAATTGACAGAACACTGTAAACCAGCTGTAATGC
AAAAAATAAAAATCATTATAAAAAAAACTTTCTTAAAGAAGGCAGCAACTGCAGTTGGAG
GATAGTCTTGAGGTTCCCGTGAAACTAGCATTGCCCTATTTTGATTTTTATCGTTTAGGC
CAAGGCCTGAACTTTTTTTTCTTTTTCCCTGGGAGGTGGAAGAATTAATCACTGCCCCCC
CCCCGACACACCCCACCAAACGAGCCTCATACCTTTATAGACAAACATGTACCTTACTGA
GGAAAGGAACTAGGGAACCACCTTTTCACTTCTCACTGTGTACATGTTCAACCACTGTCT
TGAAAACTGTTTCAGATTTCTGCTGTCTTTTGCTTTGGACAGTGTTGCATCTAGACAAGG
AGCTGAGCTGACCTTCCACAGAGACCTGGAGTCTGAAATGATCAGAACAATTAATTTATT
TGTGTCTTCTGTTATGCTTGTATTTCTTATTTTGACAATAAAAAGCCTGACTACTTTCTC
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGTTCACTCCCTGCTCAGTGCCTGGGGCCTTTGGTGTCGCCACGGGCACAGTGCCATTCA
CACCATGGCTTGCGTCTCGACTGCCCCACTTCCTCTCGAGAAACGTGGGTCCTTGGAACA
TCTTTAGTGTCGGAGCTCGGGCCGCAGGCAGCTCCGCGGCGGCGGCAGAACAGGACCTCT
GGAATGGATGGACTCTTCCTGAGCAGCTTGGCTAATTTGCAGCAGCTGGACAATGTTCCT
CTTTAATATCTGTCTGTCAGCATAACCATCACATCGTTTCACTTTGGTGGCAGGGACTCA
CAACTCCGAATTCTGTATAGAAAAGCACCTGGATCCAAGTCTTACAATGGCTTCAAGACA
ACCAGAAGTGCCTGCTCTTGAGCCTAGTGGGCCTCTAGGCAAGATGTCCCTGCCCATCGG
GATGTACCGCCGGGCATTCAGCTATGATGATGCCCTCGAGGACCCTGCGCCCATGACTCC
TCCTCCATCGGACATGGGCAGCATCCCCTGGAAGCCAGTGATTCCAGAGCGCAAGTATCA
GCACCTCGCCAAGGTGGAGGAAGGGGATGCCAGCGCCTCCTCCCCTGCTGTACCCCTGCC
ACCGGCCACTGACAGTGCGGACAAGGTCCCTGTGGTGAAGGCTAAAGCTACCCATGTCAT
CATGAGTTCTCTGATCACAAAACAGACCCAAGAGAGCATTCAGCGTTTTGAGCAACAGGC
AGGGCTGAGAGATGCTGGCTACACACCCCACAAGGGCCTTACCACCGAGGAGACCAACTA
CCTTCGAGTGGCAGAAGCGCTCCACAAACTAAAGCTGCAGAGTGGAGAGATAACGAGAGA
GGAGAAGCAGCCGGCCTCCACCCAGTCCACCCCGAGCAGCAGCCCTCACTCTTCCCCAAA
GCAGAAGTCCCGAGGCTGGTTCACTTCTGGTTCTTCCATAGCCTTACCTGGTCCCAATCT
CAGCGCCATGGATTCTGGAAGCGGGGATAAAGACAGAAGCTCAGCAGATAAGTGGGGTCT
CTTTGCACCAAGATCCCTCCAGAAGTCGGATTCAGGAAGTTTTGCCACTCAGGTGTACAG
AGGAGCCCAGAAACCTTCTCCAATGGAACTGATTCGTGTGCAGGCCACCCGAATGGCTGA
GGACCCAGCAACATTCCAGCCGCCCAAGATGGACATCCCAGTGATAGAAGGGAAGAAACA
GCTGCCTCGGACCCACAATCTCAAACCCCGGGACTTGAATGTTCTCACGCCCACTGGCTT
CTAGAGCCATCTGTTCCAGGGACTCTGGCTAGAGCGTGTCTTGTGCCCTGCTCCCTTTAC
CTTGGCTCTGACATAGGAAAGGTTTTGTTTTGTCTTTTTAAAAATCTCTCAAATGGAGGC
TGGAGCTGGAGACATAATCCGTCTTTGAGAAACAGTGTGCAAAGCTTGTCCTTGTGTGGA
AGAAGCCATCTCGTATCGCTTTAGTGTAGACAAAATAATGTCAGTAGGTGTACGGGGACC
TCATTACTTATTTTTGGTATCCTTTATATACACAGAACAAATGATGTTTGTGTTGGTCCA
AAACCAAGGCTTCTTGATTCCTTTGCCATGCTCCATGTGAGCATGGACACATGGGGGCCT
TCACTGACTAGGGTAGACAACTTTGGTCTTCCTGGCTGTGCTGGCACCATGTGCTCCAGC
CTTGCTAGTGAGGGGGACCCGAGATCTGTTGAGGTCTGGGTACACTTAAGAGGGAGACTT
GGCAGGGATCCTCTTTTCTGAGCTGAAACTGGAGTCTGTGCTTTTAGGAAGATGCTGAGG
ATCACGTGGTTCTGTGGCCAGTACCTAGTGCAGTAGCTCTTAGGCCAGTGCTATTGGAGG
GATGCTTCTCTTTTATGTGTCACTGAACAAAACACTAGTCCTGTATCCTTTGTTGCACTT
TAAGGTGAGATTAGTTTAACTCATTTGGTCGAAGACTTCCTAAGGGAGAAAATTCAGTCT
ACTGGTTTGGTAATAGATAGATGGGTATTAAACTTTCTGCAAACTATTGCCTTTGGAAGC
AAACTTGCCTTTGGAATAGATAAGCAATGAGATCTTGCTGTGTAGCACTGGGATCTATAT
CTAGTCACCTATGATGGAGCATGATAATGTGAGAAAAAAGAATGTATACATGTATGTGTA
ACTGGGTCACCTTGCCGTACAGTAGAAAATTGACAGAACACTGTAAACCAGCTGTAATGC
AAAAAATAAAAATCATTATAAAAAAAACTTTCTTAAAGAAGGCAGCAACTGCAGTTGGAG
GATAGTCTTGAGGTTCCCGTGAAACTAGCATTGCCCTATTTTGATTTTTATCGTTTAGGC
CAAGGCCTGAACTTTTTTTTCTTTTTCCCTGGGAGGTGGAAGAATTAATCACTGCCCCCC
CCCCGACACACCCCACCAAACGAGCCTCATACCTTTATAGACAAACATGTACCTTACTGA
GGAAAGGAACTAGGGAACCACCTTTTCACTTCTCACTGTGTACATGTTCAACCACTGTCT
TGAAAACTGTTTCAGATTTCTGCTGTCTTTTGCTTTGGACAGTGTTGCATCTAGACAAGG
AGCTGAGCTGACCTTCCACAGAGACCTGGAGTCTGAAATGATCAGAACAATTAATTTATT
TGTGTCTTCTGTTATGCTTGTATTTCTTATTTTGACAATAAAAAGCCTGACTACTTTCTC
AAAAAAAAAAAA
|
|
gi|61817971|ref|XP_585416.1| |
Protein identifier
|
gi|61817971|ref|XP_585416.1| |
|
53-797, gnl|bosTau2|chr8 (13356495-13357202) |
|
53-797, gnl|Hg17|chr9 (19948506-19947839) |
|
53-797, gnl|Mm7|chr4 (86798613-86797258) |
| |
|
916-1329, gnl|bosTau2|chr2 (26078666-26078263) |
|
916-1329, gnl|Hg17|chr1 (226131827-226131412) |
|
916-1329, gnl|Mm7|chr13 (53637300-53636856) |
| |
|
2034-2247, gnl|bosTau2|chr9 (4341132-4341347) |
| |
|
2036-2245, gnl|bosTau2|chr13 (18058269-18058477) |
| |
|
2054-2244, gnl|bosTau2|chr10 (39124133-39124327) |
| |
|
2468-2705, gnl|bosTau2|chr28 (24521878-24521643) |
|
2468-2705, gnl|Hg17|chr1 (226129945-226129739) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
53-797, gnl|bosTau2|chr8 (13356495-13357202) |
|
53-797, gnl|Hg17|chr9 (19948506-19947839) |
|
53-797, gnl|Mm7|chr4 (86798613-86797258) |
| |
|
916-1329, gnl|bosTau2|chr2 (26078666-26078263) |
|
916-1329, gnl|Hg17|chr1 (226131827-226131412) |
|
916-1329, gnl|Mm7|chr13 (53637300-53636856) |
| |
|
2034-2247, gnl|bosTau2|chr9 (4341132-4341347) |
| |
|
2036-2245, gnl|bosTau2|chr13 (18058269-18058477) |
| |
|
2054-2244, gnl|bosTau2|chr10 (39124133-39124327) |
| |
|
2468-2705, gnl|bosTau2|chr28 (24521878-24521643) |
|
2468-2705, gnl|Hg17|chr1 (226129945-226129739) |
|
nco (0.646935) |
|
fbs (0.526039) |
|
kid (0.518941) |
|
cki (0.495704) |
|
sto (0.359648) |
|
duo (0.345602) |
|
ecc (0.345105) |
|
vin (0.332557) |
|
cte (0.29274) |
|
pty (0.285429) |
|
ebs (0.236602) |
|
pan (0.23596) |
|
ece (0.229305) |
|
mas (0.210305) |
|
cty (0.20816) |
|
tes (0.207814) |
|
hea (0.204499) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
col (0.195008) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
mgm (0.180343) |
|
rec (0.17307) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
eli (0.151814) |
|
lun (0.150489) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
ski (0.146735) |
|
liv (0.146284) |
|
csk (0.140746) |
|
che (0.136314) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
pla (0.133672) |
|
ova (0.129132) |
|
ese (0.126502) |
|
bla (0.124347) |
|
cly (0.120642) |
|
clu (0.119646) |
|
jca (0.11396) |
|
spc (0.113366) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
|
nco (0.646935) |
|
fbs (0.526039) |
|
kid (0.518941) |
|
cki (0.495704) |
|
sto (0.359648) |
|
duo (0.345602) |
|
ecc (0.345105) |
|
vin (0.332557) |
|
cte (0.29274) |
|
pty (0.285429) |
|
ebs (0.236602) |
|
pan (0.23596) |
|
ece (0.229305) |
|
mas (0.210305) |
|
cty (0.20816) |
|
tes (0.207814) |
|
hea (0.204499) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
col (0.195008) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
mgm (0.180343) |
|
rec (0.17307) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
eli (0.151814) |
|
lun (0.150489) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
ski (0.146735) |
|
liv (0.146284) |
|
csk (0.140746) |
|
che (0.136314) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
pla (0.133672) |
|
ova (0.129132) |
|
ese (0.126502) |
|
bla (0.124347) |
|
cly (0.120642) |
|
clu (0.119646) |
|
jca (0.11396) |
|
spc (0.113366) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
