Ss1.1-Pig3-SRG8002N16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTGCCCACTATGAGCAACAGATGGCCGAGAAGCTGCAGCTGCCCACGGAGACCCTGAA GGAGCTGCTGGACCTGCACAGGGACGTCGAGAAGGAGGCCATTGAAGGCTTCATGACCAA GTCTTTCAAGGATGTGGACCAAGTGTTCCAAAAGAAATTAATGGAACAGTTAGAAGCAAA ACTCGATGACTTTTGTGACCAGAACATGAAAGCCTCCTCAGATTACTGCATGACTTTACT TCAAGATATTTTTGGGCCTCTGTATGAAGATGTGAAGCAGGGAACATTAAAATTAAATCA AACTAACAGATGTATTGTTGGGTTTACTTTACCCCTTAGCTCTAGTTCCTAATTTTAACT TTCTCTGCATCACTAGGCAGAGGAGACCCTGAAGAAGTATTTGGATTCCAGGGTGGACCT GGATGATGCACTTCTACAGACTGATCTGTCACTTACAGAAGAAGAAAAAGAGACTGAAGT GGAACGTGTAATGTCTGAATATGCAGAAGTTGCAAACAAAGTGTTAGAGGAAATGCACAA GAAGAATGAGGAGATGATGGAAGAGAAAAAGAAGAGTTACAAGGAGCAAATGGAACTAAT GGCTCAGAAAATAGAAGAGGAGAGGTCTCAGTTAATGGCTGAGATAAAGAGCGTTCTAAA ACTTAAAAATCGGGAGCAGAAACAACTCCTTGAGGAGGGATTCCTTCAGGAAAGCATGAA TCTTCTTAAAGAAATACATATTATTAAGATGAGAAGGACTGAATTATCCCTAAAGTGTAG CATTCTGTAAAAATCCAAGGAAAAAAATCCCCTAACCAGCTTCCATCTGCTAAGAACAAG GTGAACAAGCAACTTCAAGATGCCAAACCATCGCCACTCAACTAAACTTGAAATCTTGAG ACTTGCATTTTTGTTGACCTGTAAAGTCTGCAAGGATGAAATAAATAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTGCCCACTATGAGCAACAGATGGCCGAGAAGCTGCAGCTGCCCACGGAGACCCTGAA GGAGCTGCTGGACCTGCACAGGGACGTCGAGAAGGAGGCCATTGAAGGCTTCATGACCAA GTCTTTCAAGGATGTGGACCAAGTGTTCCAAAAGAAATTAATGGAACAGTTAGAAGCAAA ACTCGATGACTTTTGTGACCAGAACATGAAAGCCTCCTCAGATTACTGCATGACTTTACT TCAAGATATTTTTGGGCCTCTGTATGAAGATGTGAAGCAGGGAACATTAAAATTAAATCA AACTAACAGATGTATTGTTGGGTTTACTTTACCCCTTAGCTCTAGTTCCTAATTTTAACT TTCTCTGCATCACTAGGCAGAGGAGACCCTGAAGAAGTATTTGGATTCCAGGGTGGACCT GGATGATGCACTTCTACAGACTGATCTGTCACTTACAGAAGAAGAAAAAGAGACTGAAGT GGAACGTGTAATGTCTGAATATGCAGAAGTTGCAAACAAAGTGTTAGAGGAAATGCACAA GAAGAATGAGGAGATGATGGAAGAGAAAAAGAAGAGTTACAAGGAGCAAATGGAACTAAT GGCTCAGAAAATAGAAGAGGAGAGGTCTCAGTTAATGGCTGAGATAAAGAGCGTTCTAAA ACTTAAAAATCGGGAGCAGAAACAACTCCTTGAGGAGGGATTCCTTCAGGAAAGCATGAA TCTTCTTAAAGAAATACATATTATTAAGATGAGAAGGACTGAATTATCCCTAAAGTGTAG CATTCTGTAAAAATCCAAGGAAAAAAATCCCCTAACCAGCTTCCATCTGCTAAGAACAAG GTGAACAAGCAACTTCAAGATGCCAAACCATCGCCACTCAACTAAACTTGAAATCTTGAG ACTTGCATTTTTGTTGACCTGTAAAGTCTGCAAGGATGAAATAAATAG |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-160, gnl|bosTau2|chr3 (41052189-41052030) | |
| 1-160, gnl|canFam2|chr6 (62278482-62278322) | |
| 1-160, gnl|canFam2|chr6 (62449566-62449823) | |
| 1-160, gnl|danRer3|chr19 (35641312-35641152) | |
| 1-160, gnl|danRer3|chr19 (35641027-35641284) | |
| 1-160, gnl|dasNov1|scaffold_12102 (8516-8356) | |
| 1-160, gnl|dasNov1|scaffold_53410 (35625-35882) | |
| 1-160, gnl|echTel1|scaffold_218286 (14952-15113) | |
| 1-160, gnl|echTel1|scaffold_277203 (33520-33263) | |
| 1-160, gnl|hg17|chr1 (89291713-89291874) | |
| 1-160, gnl|hg17|chr1 (89599583-89599840) | |
| 1-160, gnl|Hg17|chr1 (89599702-89599861) | |
| 1-160, gnl|loxAfr1|scaffold_158 (129140-128883) | |
| 1-160, gnl|loxAfr1|scaffold_52235 (2408-2247) | |
| 1-160, gnl|mm7|chr3 (142499954-142499793) | |
| 1-160, gnl|mm7|chr3 (142555355-142555612) | |
| 1-160, gnl|Mm7|chr3 (142525050-142525209) | |
| 1-160, gnl|monDom2|scaffold_87 (4780226-4780067) | |
| 1-160, gnl|monDom2|scaffold_87 (4880149-4880406) | |
| 1-160, gnl|oryCun1|scaffold_193509 (6288-6031) | |
| 1-160, gnl|oryCun1|scaffold_9563 (3063-3224) | |
| 1-160, gnl|panTro1|chr1 (88094212-88094373) | |
| 1-160, gnl|panTro1|chr1 (88361898-88362156) | |
| 1-160, gnl|rheMac2|chr1 (91879283-91879444) | |
| 1-160, gnl|rheMac2|chr1 (91807112-91806855) | |
| 1-160, gnl|rn3|chr2 (240522011-240521850) | |
| 1-160, gnl|rn3|chr2 (240645885-240646142) | |
| 1-160, gnl|xenTro1|scaffold_496 (20132-19968) | |
| 1-160, gnl|xenTro1|scaffold_496 (41832-42092) | |
| 288-479, gnl|bosTau2|chr3 (41048113-41047920) | |
| 288-479, gnl|Mm7|chr3 (142528042-142528263) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-160, gnl|bosTau2|chr3 (41052189-41052030) | |
| 1-160, gnl|canFam2|chr6 (62278482-62278322) | |
| 1-160, gnl|canFam2|chr6 (62449566-62449823) | |
| 1-160, gnl|danRer3|chr19 (35641312-35641152) | |
| 1-160, gnl|danRer3|chr19 (35641027-35641284) | |
| 1-160, gnl|dasNov1|scaffold_12102 (8516-8356) | |
| 1-160, gnl|dasNov1|scaffold_53410 (35625-35882) | |
| 1-160, gnl|echTel1|scaffold_218286 (14952-15113) | |
| 1-160, gnl|echTel1|scaffold_277203 (33520-33263) | |
| 1-160, gnl|hg17|chr1 (89291713-89291874) | |
| 1-160, gnl|hg17|chr1 (89599583-89599840) | |
| 1-160, gnl|Hg17|chr1 (89599702-89599861) | |
| 1-160, gnl|loxAfr1|scaffold_158 (129140-128883) | |
| 1-160, gnl|loxAfr1|scaffold_52235 (2408-2247) | |
| 1-160, gnl|mm7|chr3 (142499954-142499793) | |
| 1-160, gnl|mm7|chr3 (142555355-142555612) | |
| 1-160, gnl|Mm7|chr3 (142525050-142525209) | |
| 1-160, gnl|monDom2|scaffold_87 (4780226-4780067) | |
| 1-160, gnl|monDom2|scaffold_87 (4880149-4880406) | |
| 1-160, gnl|oryCun1|scaffold_193509 (6288-6031) | |
| 1-160, gnl|oryCun1|scaffold_9563 (3063-3224) | |
| 1-160, gnl|panTro1|chr1 (88094212-88094373) | |
| 1-160, gnl|panTro1|chr1 (88361898-88362156) | |
| 1-160, gnl|rheMac2|chr1 (91879283-91879444) | |
| 1-160, gnl|rheMac2|chr1 (91807112-91806855) | |
| 1-160, gnl|rn3|chr2 (240522011-240521850) | |
| 1-160, gnl|rn3|chr2 (240645885-240646142) | |
| 1-160, gnl|xenTro1|scaffold_496 (20132-19968) | |
| 1-160, gnl|xenTro1|scaffold_496 (41832-42092) | |
| 288-479, gnl|bosTau2|chr3 (41048113-41047920) | |
| 288-479, gnl|Mm7|chr3 (142528042-142528263) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.495704) | |
| sin (0.174948) | |
| rec (0.17307) |