Non-Coding RNA Search

Ss1.1-Pig3-SRG8002P21.5

Sequence:


               
               GGGACCCGGTTTTGGGCAAGGGGAACATTTCTCACCTGGAGAGCCAGGCCCTGTCCTGCC
CTACCCAGGGCTCCACCTGGAAGCCTTGTACTAACATCGCAGAGATTCATTCAGCCTCAC
CCCCCCACCCCAGTTTTCCAATGTTCAGACCGGAGGGCAAAATTTTACTCCTCCTCCTCC
TCATCTCTTTGGAGACCAGGGCTGCCCTGCTGGCAGCCTGCTTTCTAAATGAAATCGACG
CCGTTTCCCCACTTGAACCCCAAATTGGGGCTTGGACCAAGGGAGGTGAGACCCGCCCCC
CACGTCCCCTCCCCTTTCAGAATCCATCTCTCATTTCGCCTCTTCCTCGTGCCCCTGCCG
CAGCCTGGGTTTTTGTTCTTTTTTTAAAAAAAACGGACAACCCCGTTCCATCCCTTTGGG
CTTCTCCTCGTCCCCTTGTAAATAGACCACGCCATCGATCAGTATTTCTCGGCACCCTCT
TCCTGCCCCCAGACGTGCGCCCACCCTACGAAAGAGCTGGCTGTCTCAGCGCCCCCGCCC
GTGCACTTCGCCTCCTCCGCCCAGGCAGAGGGAGGGGGCGGGGCTGGGTGGGCGGGGCCC
CGGGGCGCTTCCGGTTTCTCCGCCGGGGGCCACCCCTGCCCCGCCTCCCGCAGGACTGCG
TCTCTGTACATAATATATATATGTATGTATTGTTCCCGGTTTTGTACGGACCATGCCCTC
TGTCAGGTCGTCCCCATAAAAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGACCCGGTTTTGGGCAAGGGGAACATTTCTCACCTGGAGAGCCAGGCCCTGTCCTGCC
CTACCCAGGGCTCCACCTGGAAGCCTTGTACTAACATCGCAGAGATTCATTCAGCCTCAC
CCCCCCACCCCAGTTTTCCAATGTTCAGACCGGAGGGCAAAATTTTACTCCTCCTCCTCC
TCATCTCTTTGGAGACCAGGGCTGCCCTGCTGGCAGCCTGCTTTCTAAATGAAATCGACG
CCGTTTCCCCACTTGAACCCCAAATTGGGGCTTGGACCAAGGGAGGTGAGACCCGCCCCC
CACGTCCCCTCCCCTTTCAGAATCCATCTCTCATTTCGCCTCTTCCTCGTGCCCCTGCCG
CAGCCTGGGTTTTTGTTCTTTTTTTAAAAAAAACGGACAACCCCGTTCCATCCCTTTGGG
CTTCTCCTCGTCCCCTTGTAAATAGACCACGCCATCGATCAGTATTTCTCGGCACCCTCT
TCCTGCCCCCAGACGTGCGCCCACCCTACGAAAGAGCTGGCTGTCTCAGCGCCCCCGCCC
GTGCACTTCGCCTCCTCCGCCCAGGCAGAGGGAGGGGGCGGGGCTGGGTGGGCGGGGCCC
CGGGGCGCTTCCGGTTTCTCCGCCGGGGGCCACCCCTGCCCCGCCTCCCGCAGGACTGCG
TCTCTGTACATAATATATATATGTATGTATTGTTCCCGGTTTTGTACGGACCATGCCCTC
TGTCAGGTCGTCCCCATAAAAGCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|14250279|gb|AAH08564.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|14250279|gb|AAH08564.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               2-380, - strand, RNAz p=0.997133
               

               
               575-693, - strand, RNAz p=0.999662

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-380, - strand, RNAz p=0.997133
               

               
               575-693, - strand, RNAz p=0.999662

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-744, gnl|bosTau2|chr19 (29236711-29237441)
               

               
               2-744, gnl|Hg17|chr17 (45566829-45566109)
               

               
               2-744, gnl|Mm7|chr11 (95115233-95115927)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-744, gnl|bosTau2|chr19 (29236711-29237441)
               

               
               2-744, gnl|Hg17|chr17 (45566829-45566109)
               

               
               2-744, gnl|Mm7|chr11 (95115233-95115927)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               cly (0.241284)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.241284)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	2-380, - strand, RNAz p=0.997133
	575-693, - strand, RNAz p=0.999662

	2-744, gnl\|bosTau2\|chr19 (29236711-29237441)
	2-744, gnl\|Hg17\|chr17 (45566829-45566109)
	2-744, gnl\|Mm7\|chr11 (95115233-95115927)

	cly (0.241284)
	fcc (0.197785)
	fty (0.17584)
	fbs (0.175346)
	hyp (0.142837)
	nca (0.136874)
	ute (0.132784)
	cov (0.132153)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)