Non-Coding RNA Search

Ss1.1-Pig3-SRG8003A04.5

Sequence:


               
               CTTGACAGCCATAGGCCTGTCCAAAGACCCAAGCATGCATCTAATTTTGATGACTGGTTT
TCCCAACAAGCAAATTACTTGTTGTGTGTAACGTTTATGTAGTTTTGTGTATTGAGAACC
AGCTAGAACGCATTATAGTAGTCCAGCTGGATATGACAAATGTGTACATCACTGTGGCAG
AATCTTAATTTGGAAGACAGTATGCAGCCTTCAAGCCAGCTGGAGATGGAAGATGGCATT
TCCAGCCACAGTAGCTGTTAGGAAGTCCAGAAGCAACAGAGTCCAGTAACACCACAAAGC
TGTTTATGTTTGGTGGGTATGATGTCCCGATTGCCAGCGAAACAGCACTTTTCCTTATTT
ACTCTAAATACTTCTGCCTATCAGCATCACTTTTGTCTTGCCTGGATTGAATTTCTGCCA
GCTAGATTTTATCCAAGTTCTTGATTCTGGCAAGCTTGGATGCAACTAGCAGGAATGCAA
GGGATTTGACACAAGGAAGATAAAGAGTGAAGGGACATCCATGTACTGGTAGCGGTTAAG
GCCAGAGCAACCCAAACTCTCCCTCAGATTCATATTTCAAAGGAGGCTCTGAAAGCTGGA
GGAGCTATGTATTTGAGGCACCTTAAGGAGGAATAATGTCTGTATGAGTTTCTGGAATAA
TTTTTATATACCATCATTTTACATGTACCATCAGGTTTAAAAATAAGCTATGGTGAATGA
TGGGAAGGAAGCACTAGGTTTAGAAGAATCTGCAGTATATTGATATGGAGTCACTGATGA
ATGAATGTTTATCTTATAACAGCAAAATGTAGTGAGTGGGGAAAAGCATGGAAATTTGGA
ATGGCAAGACCTGGATTTAAAATGTATCTCTGTTTCTTATAATATATTTATTTGGGCCCA
ATTATTTAAGTTTCCTGATCCTAAATTTACCCATGAAAATGGACATAATAATAATTTCTT
CTCTCACTTACAGTATTTGAATAAATATGAGTGAAAAATAATGTTTATGAAAAAGCTTTG
TAAATAATAAAGAGCTGTTTTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGACAGCCATAGGCCTGTCCAAAGACCCAAGCATGCATCTAATTTTGATGACTGGTTT
TCCCAACAAGCAAATTACTTGTTGTGTGTAACGTTTATGTAGTTTTGTGTATTGAGAACC
AGCTAGAACGCATTATAGTAGTCCAGCTGGATATGACAAATGTGTACATCACTGTGGCAG
AATCTTAATTTGGAAGACAGTATGCAGCCTTCAAGCCAGCTGGAGATGGAAGATGGCATT
TCCAGCCACAGTAGCTGTTAGGAAGTCCAGAAGCAACAGAGTCCAGTAACACCACAAAGC
TGTTTATGTTTGGTGGGTATGATGTCCCGATTGCCAGCGAAACAGCACTTTTCCTTATTT
ACTCTAAATACTTCTGCCTATCAGCATCACTTTTGTCTTGCCTGGATTGAATTTCTGCCA
GCTAGATTTTATCCAAGTTCTTGATTCTGGCAAGCTTGGATGCAACTAGCAGGAATGCAA
GGGATTTGACACAAGGAAGATAAAGAGTGAAGGGACATCCATGTACTGGTAGCGGTTAAG
GCCAGAGCAACCCAAACTCTCCCTCAGATTCATATTTCAAAGGAGGCTCTGAAAGCTGGA
GGAGCTATGTATTTGAGGCACCTTAAGGAGGAATAATGTCTGTATGAGTTTCTGGAATAA
TTTTTATATACCATCATTTTACATGTACCATCAGGTTTAAAAATAAGCTATGGTGAATGA
TGGGAAGGAAGCACTAGGTTTAGAAGAATCTGCAGTATATTGATATGGAGTCACTGATGA
ATGAATGTTTATCTTATAACAGCAAAATGTAGTGAGTGGGGAAAAGCATGGAAATTTGGA
ATGGCAAGACCTGGATTTAAAATGTATCTCTGTTTCTTATAATATATTTATTTGGGCCCA
ATTATTTAAGTTTCCTGATCCTAAATTTACCCATGAAAATGGACATAATAATAATTTCTT
CTCTCACTTACAGTATTTGAATAAATATGAGTGAAAAATAATGTTTATGAAAAAGCTTTG
TAAATAATAAAGAGCTGTTTTCAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               113-272, - strand, RNAz p=0.892026
               

               
               393-512, - strand, RNAz p=0.836379

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               113-272, - strand, RNAz p=0.892026
               

               
               393-512, - strand, RNAz p=0.836379

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-566, gnl|bosTau2|chr2 (18577281-18577853)
               

               
               1-566, gnl|canFam2|chr36 (10735383-10736286)
               

               
               1-566, gnl|dasNov1|scaffold_7564 (60905-60051)
               

               
               1-566, gnl|echTel1|scaffold_313944 (117451-116605)
               

               
               1-566, gnl|hg17|chr2 (162997914-162998774)
               

               
               1-566, gnl|Hg17|chr2 (162998551-162997969)
               

               
               1-566, gnl|loxAfr1|scaffold_215 (175084-174170)
               

               
               1-566, gnl|mm7|chr2 (62574107-62575035)
               

               
               1-566, gnl|Mm7|chr2 (62574737-62574157)
               

               
               1-566, gnl|monDom2|scaffold_2 (57021766-57022616)
               

               
               1-566, gnl|oryCun1|scaffold_213032 (42825-42007)
               

               
               1-566, gnl|panTro1|chr13 (52396145-52397005)
               

               
               1-566, gnl|rheMac2|chr12 (25887973-25888827)
               

               
               1-566, gnl|rn3|chr3 (44487684-44488514)
               


               
               672-1043, gnl|bosTau2|chr2 (18577924-18578282)
               

               
               672-1043, gnl|Hg17|chr2 (162997875-162997534)
               

               
               672-1043, gnl|Mm7|chr2 (62574068-62573715)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-566, gnl|bosTau2|chr2 (18577281-18577853)
               

               
               1-566, gnl|canFam2|chr36 (10735383-10736286)
               

               
               1-566, gnl|dasNov1|scaffold_7564 (60905-60051)
               

               
               1-566, gnl|echTel1|scaffold_313944 (117451-116605)
               

               
               1-566, gnl|hg17|chr2 (162997914-162998774)
               

               
               1-566, gnl|Hg17|chr2 (162998551-162997969)
               

               
               1-566, gnl|loxAfr1|scaffold_215 (175084-174170)
               

               
               1-566, gnl|mm7|chr2 (62574107-62575035)
               

               
               1-566, gnl|Mm7|chr2 (62574737-62574157)
               

               
               1-566, gnl|monDom2|scaffold_2 (57021766-57022616)
               

               
               1-566, gnl|oryCun1|scaffold_213032 (42825-42007)
               

               
               1-566, gnl|panTro1|chr13 (52396145-52397005)
               

               
               1-566, gnl|rheMac2|chr12 (25887973-25888827)
               

               
               1-566, gnl|rn3|chr3 (44487684-44488514)
               


               
               672-1043, gnl|bosTau2|chr2 (18577924-18578282)
               

               
               672-1043, gnl|Hg17|chr2 (162997875-162997534)
               

               
               672-1043, gnl|Mm7|chr2 (62574068-62573715)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lin (0.145603)
               

               
               thg (0.126791)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               thg (0.126791)

	113-272, - strand, RNAz p=0.892026
	393-512, - strand, RNAz p=0.836379

	1-566, gnl\|bosTau2\|chr2 (18577281-18577853)
	1-566, gnl\|canFam2\|chr36 (10735383-10736286)
	1-566, gnl\|dasNov1\|scaffold_7564 (60905-60051)
	1-566, gnl\|echTel1\|scaffold_313944 (117451-116605)
	1-566, gnl\|hg17\|chr2 (162997914-162998774)
	1-566, gnl\|Hg17\|chr2 (162998551-162997969)
	1-566, gnl\|loxAfr1\|scaffold_215 (175084-174170)
	1-566, gnl\|mm7\|chr2 (62574107-62575035)
	1-566, gnl\|Mm7\|chr2 (62574737-62574157)
	1-566, gnl\|monDom2\|scaffold_2 (57021766-57022616)
	1-566, gnl\|oryCun1\|scaffold_213032 (42825-42007)
	1-566, gnl\|panTro1\|chr13 (52396145-52397005)
	1-566, gnl\|rheMac2\|chr12 (25887973-25888827)
	1-566, gnl\|rn3\|chr3 (44487684-44488514)

	672-1043, gnl\|bosTau2\|chr2 (18577924-18578282)
	672-1043, gnl\|Hg17\|chr2 (162997875-162997534)
	672-1043, gnl\|Mm7\|chr2 (62574068-62573715)