Non-Coding RNA Search

Ss1.1-Pig3-SRG8003A07.3

Sequence:


               
               TCACCATGGCCACACACCCCGATGGTTCCGGCTCGAGGGACCCCTGGCTACAGCGCACAG
CACCGGGCCTCGCACCGTGCTCTATGAAGGCCCTGTCCGTGGGCTCTGCCCCTTTGCCCC
CCGAAATTCTAACACCATGGCAGCTGCTGCCCTGGCCGCCCCCAGCCTGGGCTTTGACCG
TGTGATTGGGGTGCTTGTGGCTGATTTCAGCCTCAAGGACATGCACGTGGTGGATGTGGA
GCTGAGCGGCCCCCCAGGCCCCACAGGCCGAAGCTTTGCTGTGCACACCCACAGGGAGAA
CCCAGCTGAGCCCGGTGCTGTCACTGGCTCTGCCACTGTCACCGCCTTCTGGCGCAGCCT
CCTGGGCTGCTGCCAGCTCCCCTCCAAGCCGGGAATCCATTTCTGCTGAGAAGCCTCCTC
CTTCCCATAAGGACATCTTTGTCTCATGTACTTCCTCACCACCGTCCGGCTCCTACCCCG
GCCTCGGTGTCCCCATACCTCCCTCGTGTCTCAGTAAATATGGAGGTTCTTTTCCCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACCATGGCCACACACCCCGATGGTTCCGGCTCGAGGGACCCCTGGCTACAGCGCACAG
CACCGGGCCTCGCACCGTGCTCTATGAAGGCCCTGTCCGTGGGCTCTGCCCCTTTGCCCC
CCGAAATTCTAACACCATGGCAGCTGCTGCCCTGGCCGCCCCCAGCCTGGGCTTTGACCG
TGTGATTGGGGTGCTTGTGGCTGATTTCAGCCTCAAGGACATGCACGTGGTGGATGTGGA
GCTGAGCGGCCCCCCAGGCCCCACAGGCCGAAGCTTTGCTGTGCACACCCACAGGGAGAA
CCCAGCTGAGCCCGGTGCTGTCACTGGCTCTGCCACTGTCACCGCCTTCTGGCGCAGCCT
CCTGGGCTGCTGCCAGCTCCCCTCCAAGCCGGGAATCCATTTCTGCTGAGAAGCCTCCTC
CTTCCCATAAGGACATCTTTGTCTCATGTACTTCCTCACCACCGTCCGGCTCCTACCCCG
GCCTCGGTGTCCCCATACCTCCCTCGTGTCTCAGTAAATATGGAGGTTCTTTTCCCCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|42490927|gb|AAH66359.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|42490927|gb|AAH66359.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               405-536, - strand, RNAz p=0.949072

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               405-536, - strand, RNAz p=0.949072

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-210, gnl|bosTau2|chr18 (49317102-49316892)
               

               
               1-210, gnl|canFam2|chr1 (109115569-109115293)
               

               
               1-210, gnl|dasNov1|scaffold_54750 (3581-3876)
               

               
               1-210, gnl|fr1|chrUn (165511256-165511542)
               

               
               1-210, gnl|hg17|chr19 (55707401-55707675)
               

               
               1-210, gnl|Hg17|chr19 (55707639-55707429)
               

               
               1-210, gnl|mm7|chr7 (40643058-40642787)
               

               
               1-210, gnl|Mm7|chr7 (40642819-40643029)
               

               
               1-210, gnl|monDom2|scaffold_850 (5776-6115)
               

               
               1-210, gnl|panTro1|chr20 (53014787-53015061)
               

               
               1-210, gnl|rheMac2|chr19 (56719956-56720229)
               

               
               1-210, gnl|rn3|chr1 (95022546-95022275)
               

               
               1-210, gnl|tetNig1|chrUn_random (40374351-40374076)
               

               
               1-210, gnl|xenTro1|scaffold_1368 (36319-36573)
               


               
               365-536, gnl|bosTau2|chr18 (49316235-49316058)
               

               
               365-536, gnl|Hg17|chr19 (55706843-55706673)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-210, gnl|bosTau2|chr18 (49317102-49316892)
               

               
               1-210, gnl|canFam2|chr1 (109115569-109115293)
               

               
               1-210, gnl|dasNov1|scaffold_54750 (3581-3876)
               

               
               1-210, gnl|fr1|chrUn (165511256-165511542)
               

               
               1-210, gnl|hg17|chr19 (55707401-55707675)
               

               
               1-210, gnl|Hg17|chr19 (55707639-55707429)
               

               
               1-210, gnl|mm7|chr7 (40643058-40642787)
               

               
               1-210, gnl|Mm7|chr7 (40642819-40643029)
               

               
               1-210, gnl|monDom2|scaffold_850 (5776-6115)
               

               
               1-210, gnl|panTro1|chr20 (53014787-53015061)
               

               
               1-210, gnl|rheMac2|chr19 (56719956-56720229)
               

               
               1-210, gnl|rn3|chr1 (95022546-95022275)
               

               
               1-210, gnl|tetNig1|chrUn_random (40374351-40374076)
               

               
               1-210, gnl|xenTro1|scaffold_1368 (36319-36573)
               


               
               365-536, gnl|bosTau2|chr18 (49316235-49316058)
               

               
               365-536, gnl|Hg17|chr19 (55706843-55706673)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cli (0.305623)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.305623)

	1-210, gnl\|bosTau2\|chr18 (49317102-49316892)
	1-210, gnl\|canFam2\|chr1 (109115569-109115293)
	1-210, gnl\|dasNov1\|scaffold_54750 (3581-3876)
	1-210, gnl\|fr1\|chrUn (165511256-165511542)
	1-210, gnl\|hg17\|chr19 (55707401-55707675)
	1-210, gnl\|Hg17\|chr19 (55707639-55707429)
	1-210, gnl\|mm7\|chr7 (40643058-40642787)
	1-210, gnl\|Mm7\|chr7 (40642819-40643029)
	1-210, gnl\|monDom2\|scaffold_850 (5776-6115)
	1-210, gnl\|panTro1\|chr20 (53014787-53015061)
	1-210, gnl\|rheMac2\|chr19 (56719956-56720229)
	1-210, gnl\|rn3\|chr1 (95022546-95022275)
	1-210, gnl\|tetNig1\|chrUn_random (40374351-40374076)
	1-210, gnl\|xenTro1\|scaffold_1368 (36319-36573)

	365-536, gnl\|bosTau2\|chr18 (49316235-49316058)
	365-536, gnl\|Hg17\|chr19 (55706843-55706673)