Non-Coding RNA Search

Ss1.1-Pig3-SRG8003B18.3

Sequence:


               
               GTCCCCCACTCTCCAGTCTCGCTAGACAGAGCATTTGGCCAGAAGTCAGTTTATTTTGGA
TGAGACAAATTTCCTGACAAGGTGTATTTGTTTTCTTGTGACAGGAAGGCAGAGAAGCAA
ATCCCAGTCTTTTTTTTCCCTTGAATACTAAATGCAGGATAGGTCAGCCGGTTGCCACTG
CGCCCTGAGCATCAGGCCTTGCTTGAGCATTTATGACTCAAGCTTCCAGGAGACTGTTTC
TCTCCTAAGAAACAGTGACCCAGACCTAACTGTCTTTTAAAAATCTCAGATTCTCTAGGA
ATATTTTTATTGCCTGCTCACTAGTAATTTTGAAGCAAATTTCTATTTTTCTTGGTTCCT
GTTCCTTTCCCCAACCACCAACTGGATGGATTGGTGGGTGAATATTTGGCTTGATGGATA
GATGGATAAAGAGACAGGCAGAACCAATACTCTGAAGCAATTAAGAAGTAGAGCCTTGAC
TCCTTGAGACTGTAGATTCTGATCCAGGAAAAACTTATTTAGCACCTGCTGCCAGAAATT
TATTATACCATTTTAAACTCAATAGCACTTACCAACATCAGGAATGAGAGCGGCGACATC
AGTATGGATCCTACCGGAATTATTAAATGGCTGCTAATTTTATGAAAAACTTTGTGCTGA
TAAATCAACAGCTTAAATAAAATGGACCAATTCCTTAAAAGATAGAGCATACCAAAGCTC
ACGCAAGAAGAAATAGATAATCTGAAGCGCCCTATCTCTGTTTAAACATAGTGGCTCTGG
GAGATAGAGGTATTCTTGTCCCCACTTTACAGAGGAGGAAACTGAGGCTCAGGGGGGTCA
AGTCTGTTGCCCAAGATCACATGGCTGGAATATAGCAGAGTCAGAATTCAAATCCACGTC
TTCTGAGTCTCATTTCAGTGCCCTTTCTCCCACACCACGTTGCCTCTAAAGATCGCAGCT
CCTTTTTTACTGGAACCTAGTTCTGGCCAGCCCACATCCTCTCACCCCAGCCTTTCGTAA
GCGCCGTGTCTGTGTTTTCATCAGGATGGGAGTCATTGTACTTGGAATCCATGTTCTTTT
TTATGTGTTTGGGAAAAAAAAGGAATCTCTTCCACCAGCTCGCCCTTGGACCAACTTGGA
GAACGAAGAGCTTGAATGTTGTCGCAGATGTACCACTTAAAAAAATGTGAAGTTTGTAGC
TTTAACTTTTTGTAACAAAAACGAATGACACTGGCGAAAGTGCTGACTGGAAATGCTATT
TTATAAAGTGTGGGTGTAAATAATCAATCGAGGTCAGCAGTTTGTATATGTATGAGACAT
AGCTTCCTCCATCGCCCTTTAAAAAAAAAATGAGATGCTTCCTATGTGCTTTTATGTTAG
AATTAGCATTCTCCCCCTTCCTACTTCCTGTATCTTGTCACCTTTGTTTTAAATAAACTG
TCCTTTGGACCAGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCCCCACTCTCCAGTCTCGCTAGACAGAGCATTTGGCCAGAAGTCAGTTTATTTTGGA
TGAGACAAATTTCCTGACAAGGTGTATTTGTTTTCTTGTGACAGGAAGGCAGAGAAGCAA
ATCCCAGTCTTTTTTTTCCCTTGAATACTAAATGCAGGATAGGTCAGCCGGTTGCCACTG
CGCCCTGAGCATCAGGCCTTGCTTGAGCATTTATGACTCAAGCTTCCAGGAGACTGTTTC
TCTCCTAAGAAACAGTGACCCAGACCTAACTGTCTTTTAAAAATCTCAGATTCTCTAGGA
ATATTTTTATTGCCTGCTCACTAGTAATTTTGAAGCAAATTTCTATTTTTCTTGGTTCCT
GTTCCTTTCCCCAACCACCAACTGGATGGATTGGTGGGTGAATATTTGGCTTGATGGATA
GATGGATAAAGAGACAGGCAGAACCAATACTCTGAAGCAATTAAGAAGTAGAGCCTTGAC
TCCTTGAGACTGTAGATTCTGATCCAGGAAAAACTTATTTAGCACCTGCTGCCAGAAATT
TATTATACCATTTTAAACTCAATAGCACTTACCAACATCAGGAATGAGAGCGGCGACATC
AGTATGGATCCTACCGGAATTATTAAATGGCTGCTAATTTTATGAAAAACTTTGTGCTGA
TAAATCAACAGCTTAAATAAAATGGACCAATTCCTTAAAAGATAGAGCATACCAAAGCTC
ACGCAAGAAGAAATAGATAATCTGAAGCGCCCTATCTCTGTTTAAACATAGTGGCTCTGG
GAGATAGAGGTATTCTTGTCCCCACTTTACAGAGGAGGAAACTGAGGCTCAGGGGGGTCA
AGTCTGTTGCCCAAGATCACATGGCTGGAATATAGCAGAGTCAGAATTCAAATCCACGTC
TTCTGAGTCTCATTTCAGTGCCCTTTCTCCCACACCACGTTGCCTCTAAAGATCGCAGCT
CCTTTTTTACTGGAACCTAGTTCTGGCCAGCCCACATCCTCTCACCCCAGCCTTTCGTAA
GCGCCGTGTCTGTGTTTTCATCAGGATGGGAGTCATTGTACTTGGAATCCATGTTCTTTT
TTATGTGTTTGGGAAAAAAAAGGAATCTCTTCCACCAGCTCGCCCTTGGACCAACTTGGA
GAACGAAGAGCTTGAATGTTGTCGCAGATGTACCACTTAAAAAAATGTGAAGTTTGTAGC
TTTAACTTTTTGTAACAAAAACGAATGACACTGGCGAAAGTGCTGACTGGAAATGCTATT
TTATAAAGTGTGGGTGTAAATAATCAATCGAGGTCAGCAGTTTGTATATGTATGAGACAT
AGCTTCCTCCATCGCCCTTTAAAAAAAAAATGAGATGCTTCCTATGTGCTTTTATGTTAG
AATTAGCATTCTCCCCCTTCCTACTTCCTGTATCTTGTCACCTTTGTTTTAAATAAACTG
TCCTTTGGACCAGAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               9-652, gnl|bosTau2|chr13 (55713065-55712410)
               

               
               9-652, gnl|Hg17|chr20 (43139943-43140998)
               

               
               9-652, gnl|Mm7|chr2 (163895083-163895687)
               


               
               775-1454, gnl|bosTau2|chr13 (55712367-55711689)
               

               
               775-1454, gnl|Hg17|chr20 (43141046-43142006)
               

               
               775-1454, gnl|Mm7|chr2 (163895758-163896414)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-652, gnl|bosTau2|chr13 (55713065-55712410)
               

               
               9-652, gnl|Hg17|chr20 (43139943-43140998)
               

               
               9-652, gnl|Mm7|chr2 (163895083-163895687)
               


               
               775-1454, gnl|bosTau2|chr13 (55712367-55711689)
               

               
               775-1454, gnl|Hg17|chr20 (43141046-43142006)
               

               
               775-1454, gnl|Mm7|chr2 (163895758-163896414)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               cbl (0.45919)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               thg (0.253582)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.45919)
               

               
               lin (0.436808)
               

               
               spl (0.429553)
               

               
               thg (0.253582)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	9-652, gnl\|bosTau2\|chr13 (55713065-55712410)
	9-652, gnl\|Hg17\|chr20 (43139943-43140998)
	9-652, gnl\|Mm7\|chr2 (163895083-163895687)

	775-1454, gnl\|bosTau2\|chr13 (55712367-55711689)
	775-1454, gnl\|Hg17\|chr20 (43141046-43142006)
	775-1454, gnl\|Mm7\|chr2 (163895758-163896414)

	cbl (0.45919)
	lin (0.436808)
	spl (0.429553)
	thg (0.253582)
	fbs (0.175346)
	rec (0.17307)
	duo (0.172801)
	mga (0.160205)
	fco (0.157208)
	lnt (0.142308)
	sug (0.127291)
	cly (0.120642)
	clu (0.119646)
	med (0.116252)
	ecc (0.115035)
	cty (0.10408)