Non-Coding RNA Search

Ss1.1-Pig3-SRG8003B19.3.5

Sequence:


               
               AAATGTATATATTCTTTTAATTATTGTAATTGATACTTTTCCTTTCCAAAATTCCTTACA
TTGGTGATATAAAGAGTTCCTCTAATAATTTCTGTTTTAAACTAGTACTTTAAATTAGAG
TAGGCTTTTCTACATTATACCCTTCCATGGTTCCTTAAGAGGAGGTGATACCTGCAGAGC
ACTTTTAAAGATATTTTATGGGTTAATATTCAAGATAACACATTGAAGAAGAAACTATGT
CTAATGAGGACTCTTGGTTGCTAGAGATGAGAAAAATGTATACTGATTTTAATTTGTGCT
TAAAGTATACTTTACTAACTTGATTTTTAAATATGACAAATTCTTCTTGTAGATATTAAT
CTTCCTTGCTTATTGTATTTTCCTAGAGAAACCTAGATGAAAATGTATTCCAACTAGTCT
CTGTATATTGACATATGTGCTCTATGTATATTGACATGATTAAAGCTGCATTTAACACAA
CAAATTAGAAACCTTTTGAAAAGTTTTAGGTTTGTTGTATTGGAATTTCTAATATGATAC
AAGGTTTTCACTCAAGTTTTGTATGCAAGAAAAGGCAGAAAATTTTTTTACCTCTATATC
ACCTTATTAGCTTGTGTTTCTCTGTATCCAAGAAAAATTTTACACTCAAGGAATATTCTA
ATATGTGATCATCTTAGAGCACTTGGGTGCATTTGTATTTCATCAGTGCTGATATGTTAG
GTACCCAGGGAAATAATGCTTCAGGGCCTTCTTGATAAGACAACTTCATGAATGGCTGGG
GATATTTATGTTTGTGCTCAGAATGGGATGGAGTGGCTAATGGTGTAGGGATGTCTCCAT
TGGCAAAGCAGTGCAATCAGCTGCTTTGCCAGGTGTGTTACTTCATTATACTTGTAACGT
CATTCTTGTGTCCATAACTTACTGAAATGTTAAGCTGCAGAAATGTAAGGCATTGGGTTC
AGGTAACCAGTGATGGGACCTTGTTTATAATGAAATAAAAGAATAATGTTAAGGTATTTT
GGGGGGAAATGACAAATATGATTTTACTGGTGAATTAACGTGTTTAATATGTATATTAAC
TTTTTTTTCCCCAAAGTTGCATGTTACCCTGGTATAAAGTATTGTCTCTGCTTTATGCTT
TGAGTAAAAAGGAAAAAAAGTCGAGTTAAATTGTTACCCTATTATGTACTATTACGTATA
CCTTTTCTTTTAGAAAAGGTTAATTATAATTGCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGTATATATTCTTTTAATTATTGTAATTGATACTTTTCCTTTCCAAAATTCCTTACA
TTGGTGATATAAAGAGTTCCTCTAATAATTTCTGTTTTAAACTAGTACTTTAAATTAGAG
TAGGCTTTTCTACATTATACCCTTCCATGGTTCCTTAAGAGGAGGTGATACCTGCAGAGC
ACTTTTAAAGATATTTTATGGGTTAATATTCAAGATAACACATTGAAGAAGAAACTATGT
CTAATGAGGACTCTTGGTTGCTAGAGATGAGAAAAATGTATACTGATTTTAATTTGTGCT
TAAAGTATACTTTACTAACTTGATTTTTAAATATGACAAATTCTTCTTGTAGATATTAAT
CTTCCTTGCTTATTGTATTTTCCTAGAGAAACCTAGATGAAAATGTATTCCAACTAGTCT
CTGTATATTGACATATGTGCTCTATGTATATTGACATGATTAAAGCTGCATTTAACACAA
CAAATTAGAAACCTTTTGAAAAGTTTTAGGTTTGTTGTATTGGAATTTCTAATATGATAC
AAGGTTTTCACTCAAGTTTTGTATGCAAGAAAAGGCAGAAAATTTTTTTACCTCTATATC
ACCTTATTAGCTTGTGTTTCTCTGTATCCAAGAAAAATTTTACACTCAAGGAATATTCTA
ATATGTGATCATCTTAGAGCACTTGGGTGCATTTGTATTTCATCAGTGCTGATATGTTAG
GTACCCAGGGAAATAATGCTTCAGGGCCTTCTTGATAAGACAACTTCATGAATGGCTGGG
GATATTTATGTTTGTGCTCAGAATGGGATGGAGTGGCTAATGGTGTAGGGATGTCTCCAT
TGGCAAAGCAGTGCAATCAGCTGCTTTGCCAGGTGTGTTACTTCATTATACTTGTAACGT
CATTCTTGTGTCCATAACTTACTGAAATGTTAAGCTGCAGAAATGTAAGGCATTGGGTTC
AGGTAACCAGTGATGGGACCTTGTTTATAATGAAATAAAAGAATAATGTTAAGGTATTTT
GGGGGGAAATGACAAATATGATTTTACTGGTGAATTAACGTGTTTAATATGTATATTAAC
TTTTTTTTCCCCAAAGTTGCATGTTACCCTGGTATAAAGTATTGTCTCTGCTTTATGCTT
TGAGTAAAAAGGAAAAAAAGTCGAGTTAAATTGTTACCCTATTATGTACTATTACGTATA
CCTTTTCTTTTAGAAAAGGTTAATTATAATTGCTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               614-733, - strand, RNAz p=0.908424

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               614-733, - strand, RNAz p=0.908424

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1229, gnl|bosTau2|chr2 (29524498-29525730)
               

               
               1-1229, gnl|Hg17|chr2 (152479923-152478698)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1229, gnl|bosTau2|chr2 (29524498-29525730)
               

               
               1-1229, gnl|Hg17|chr2 (152479923-152478698)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               liv (0.585137)
               

               
               col (0.195008)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.585137)
               

               
               col (0.195008)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	1-1229, gnl\|bosTau2\|chr2 (29524498-29525730)
	1-1229, gnl\|Hg17\|chr2 (152479923-152478698)

	liv (0.585137)
	col (0.195008)
	fhi (0.169578)
	mga (0.160205)
	spl (0.143184)
	pty (0.142714)
	lnt (0.142308)
	ssp (0.13552)
	ste (0.135208)
	ute (0.132784)
	ova (0.129132)
	ese (0.126502)
	pgl (0.118483)
	med (0.116252)
	ecc (0.115035)