Non-Coding RNA Search

Ss1.1-Pig3-SRG8003B20.5

Sequence:


               
               GGAGGAGAGGGTCAAGAACAGGACAGTCTTGCAGGTGGTGGCCAAGCACGTGCTGGAGGT
CAGGACGGTCCCCCGGACCCTGGCCGCTTCCACCTCGCCAGCCACACAGACAGAGGGTCG
TAAGATCACCTCCAGAGTATCAGCGGGGTTCACCCAAAGCTCCCCTCCGCAGACCCCAGC
CGTGAGGGTCACCACCCCTGGGGCCATCGCCCCCCCTTCCAGCCCCGAGGCGCCCACCAG
CACGTCCTGTGAGCCAAAGATTGTCATCAATACCGTCCCCCAGGTCCACTCGGAGAAGAC
GATGTATCTCAAGTCTGGCGACAACCGCCTCCTCATGTTCCTCTTCCTCTTCTTCTTCGT
CGTCTTCCTCTGCCTCTTCTCCTACAACTGCTATAAGGGCTACCTGCCCGGACAGTGCTT
AAAATTCCGCTCGGCCGTGCTGCTGGGGAAGAAGAAGCCCACGGCGGACTTCTCAGACTG
CGAGCAGAGCGTCAAGGAGACGCTGGTGGAGCAGGGCAGTTTCTCCCAGCAGAACGGGGG
GCAGCCCAAGCCGGCGCTGGACACGGGCTACGAGACGGAGCAGGACACCATGGCCAGCAG
GCTGCCCACCGACAGGGAGGACTCGCAGAGGATCGACGAGCTCCCAGTCAGGGACCGGCC
GTTCGACGTCAAGTGCGAGCTCAGGTTCGCTGACTCGGACGCAGACGCGGACGGGGACTG
AGGCACCCGCCGCGCGCAGGGAGGTCTTTGTGTCGCCAGTTCTGTGACCCTGTCCAGTGC
CGCCTACGTAGCTGTTGTCAGCAAACCTCAGTCTTGTGTCTTTCCTCTTGGGTCGCGCTT
GTGACTTGGTTTCTCTTTGTCCCTCGGAAAACAGCGAGCATCCCATCGCGCCCGGCCTCC
CCGGTGGGTCAGAGCGCTTGGAGCTGTGTCCTCAGGCTCGGCCGAGCACACTCTGAGGCG
GAAGGATGGCGGGGCTGCCACTGGCCTGGGAAGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGAGAGGGTCAAGAACAGGACAGTCTTGCAGGTGGTGGCCAAGCACGTGCTGGAGGT
CAGGACGGTCCCCCGGACCCTGGCCGCTTCCACCTCGCCAGCCACACAGACAGAGGGTCG
TAAGATCACCTCCAGAGTATCAGCGGGGTTCACCCAAAGCTCCCCTCCGCAGACCCCAGC
CGTGAGGGTCACCACCCCTGGGGCCATCGCCCCCCCTTCCAGCCCCGAGGCGCCCACCAG
CACGTCCTGTGAGCCAAAGATTGTCATCAATACCGTCCCCCAGGTCCACTCGGAGAAGAC
GATGTATCTCAAGTCTGGCGACAACCGCCTCCTCATGTTCCTCTTCCTCTTCTTCTTCGT
CGTCTTCCTCTGCCTCTTCTCCTACAACTGCTATAAGGGCTACCTGCCCGGACAGTGCTT
AAAATTCCGCTCGGCCGTGCTGCTGGGGAAGAAGAAGCCCACGGCGGACTTCTCAGACTG
CGAGCAGAGCGTCAAGGAGACGCTGGTGGAGCAGGGCAGTTTCTCCCAGCAGAACGGGGG
GCAGCCCAAGCCGGCGCTGGACACGGGCTACGAGACGGAGCAGGACACCATGGCCAGCAG
GCTGCCCACCGACAGGGAGGACTCGCAGAGGATCGACGAGCTCCCAGTCAGGGACCGGCC
GTTCGACGTCAAGTGCGAGCTCAGGTTCGCTGACTCGGACGCAGACGCGGACGGGGACTG
AGGCACCCGCCGCGCGCAGGGAGGTCTTTGTGTCGCCAGTTCTGTGACCCTGTCCAGTGC
CGCCTACGTAGCTGTTGTCAGCAAACCTCAGTCTTGTGTCTTTCCTCTTGGGTCGCGCTT
GTGACTTGGTTTCTCTTTGTCCCTCGGAAAACAGCGAGCATCCCATCGCGCCCGGCCTCC
CCGGTGGGTCAGAGCGCTTGGAGCTGTGTCCTCAGGCTCGGCCGAGCACACTCTGAGGCG
GAAGGATGGCGGGGCTGCCACTGGCCTGGGAAGAGG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-994, gnl|bosTau2|chr8 (52090027-52089047)
               

               
               1-994, gnl|Hg17|chr9 (89223884-89222840)
               

               
               1-994, gnl|Mm7|chr13 (50737409-50736438)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-994, gnl|bosTau2|chr8 (52090027-52089047)
               

               
               1-994, gnl|Hg17|chr9 (89223884-89222840)
               

               
               1-994, gnl|Mm7|chr13 (50737409-50736438)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)

	1-994, gnl\|bosTau2\|chr8 (52090027-52089047)
	1-994, gnl\|Hg17\|chr9 (89223884-89222840)
	1-994, gnl\|Mm7\|chr13 (50737409-50736438)