Ss1.1-Pig3-SRG8003C01.3
|
GGAGCCATGGGACCCTTCCATTTTCTACCTGTGCATTGCAGGATTACTCGAGATCTCTCT
TAGGGCTGCCTTACCTGCTAGAAGATCCAGAGCTTTCTCCAGAGGATCTTCTCCAGATTT
TGACCAGCATGTTCAAAAGTGAATTGGTTCTAAGATTCCCACTAGGGATCTGCTGATTTT
AAGAGGAACCCGAGGTCCAGCCTCTTAAATAGATGCTGCCCCATGAAGGACTCACAGAAC
TAGCCTAGTTCAGGGTCCTTAGGGAGACAGTTGTACCTCAGCTTAGAGCAGCTTAACTTC
AGCATGAGTGTGTGCTCATGGTGGGTTGGTCCCCGAAGGCTCCATTGGCTGAGGATGGTG
GACCAGGGGCTCCTGCAGGCAGAATGTTCTGTTTAATGATGTGGCTGCCCAGCAGCTTCC
ATGGGATAGAAGGGGACCTGCGGCTGATGTGTTCTGGCCACAAAGCTTTCCCTGAGGACT
GCCTTCCGCGCTGATCCAGTGAAGGGGGCTCTGGTGACACCAGGTCTGTGGGAACCCCAC
CACCATCACCATGGGCTGCATTTCCTCTCAGTATAAGGTTTCTGTTTACTGAAAAGGAAA
GTGGTTTCCACTCCAGTTTGATGAACCTCCTCTGTTACTACATTACTCTGTTGTCTTTAC
ATCTTTGTTTTCTTCCTTTCTGTTGAGAGATGTGTGGGGTTTATGCCCTATAAATGGAAA
CATATGAACACTTAATCCATGGCCATGTGGAATTTTTGGGGTTATTGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGAGCCATGGGACCCTTCCATTTTCTACCTGTGCATTGCAGGATTACTCGAGATCTCTCT
TAGGGCTGCCTTACCTGCTAGAAGATCCAGAGCTTTCTCCAGAGGATCTTCTCCAGATTT
TGACCAGCATGTTCAAAAGTGAATTGGTTCTAAGATTCCCACTAGGGATCTGCTGATTTT
AAGAGGAACCCGAGGTCCAGCCTCTTAAATAGATGCTGCCCCATGAAGGACTCACAGAAC
TAGCCTAGTTCAGGGTCCTTAGGGAGACAGTTGTACCTCAGCTTAGAGCAGCTTAACTTC
AGCATGAGTGTGTGCTCATGGTGGGTTGGTCCCCGAAGGCTCCATTGGCTGAGGATGGTG
GACCAGGGGCTCCTGCAGGCAGAATGTTCTGTTTAATGATGTGGCTGCCCAGCAGCTTCC
ATGGGATAGAAGGGGACCTGCGGCTGATGTGTTCTGGCCACAAAGCTTTCCCTGAGGACT
GCCTTCCGCGCTGATCCAGTGAAGGGGGCTCTGGTGACACCAGGTCTGTGGGAACCCCAC
CACCATCACCATGGGCTGCATTTCCTCTCAGTATAAGGTTTCTGTTTACTGAAAAGGAAA
GTGGTTTCCACTCCAGTTTGATGAACCTCCTCTGTTACTACATTACTCTGTTGTCTTTAC
ATCTTTGTTTTCTTCCTTTCTGTTGAGAGATGTGTGGGGTTTATGCCCTATAAATGGAAA
CATATGAACACTTAATCCATGGCCATGTGGAATTTTTGGGGTTATTGG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-521, gnl|bosTau2|chr23 (22314783-22315317) |
|
1-521, gnl|Hg17|chr6 (52377837-52378387) |
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1-521, gnl|Mm7|chr1 (21132285-21132805) |
| |
|
542-755, gnl|bosTau2|chr23 (22315315-22315523) |
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542-755, gnl|canFam2|chr12 (23058623-23059123) |
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542-755, gnl|echTel1|scaffold_324150 (4349-4820) |
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542-755, gnl|hg17|chr6 (52378157-52378628) |
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542-755, gnl|Hg17|chr6 (52378369-52378589) |
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542-755, gnl|loxAfr1|scaffold_30674 (16977-16503) |
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542-755, gnl|mm7|chr1 (21132578-21133053) |
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542-755, gnl|Mm7|chr1 (21132787-21133021) |
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542-755, gnl|oryCun1|scaffold_214120 (46515-46998) |
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542-755, gnl|panTro1|chr5 (53394711-53395184) |
|
542-755, gnl|rheMac2|chr4 (52080648-52081109) |
|
542-755, gnl|rn3|chr9 (19676541-19677030) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-521, gnl|bosTau2|chr23 (22314783-22315317) |
|
1-521, gnl|Hg17|chr6 (52377837-52378387) |
|
1-521, gnl|Mm7|chr1 (21132285-21132805) |
| |
|
542-755, gnl|bosTau2|chr23 (22315315-22315523) |
|
542-755, gnl|canFam2|chr12 (23058623-23059123) |
|
542-755, gnl|echTel1|scaffold_324150 (4349-4820) |
|
542-755, gnl|hg17|chr6 (52378157-52378628) |
|
542-755, gnl|Hg17|chr6 (52378369-52378589) |
|
542-755, gnl|loxAfr1|scaffold_30674 (16977-16503) |
|
542-755, gnl|mm7|chr1 (21132578-21133053) |
|
542-755, gnl|Mm7|chr1 (21132787-21133021) |
|
542-755, gnl|oryCun1|scaffold_214120 (46515-46998) |
|
542-755, gnl|panTro1|chr5 (53394711-53395184) |
|
542-755, gnl|rheMac2|chr4 (52080648-52081109) |
|
542-755, gnl|rn3|chr9 (19676541-19677030) |
|
nep (0.183925) |
|
hyp (0.142837) |
|
pla (0.133672) |
|
spc (0.113366) |
|
nep (0.183925) |
|
hyp (0.142837) |
|
pla (0.133672) |
|
spc (0.113366) |
