Non-Coding RNA Search

Ss1.1-Pig3-SRG8003C05.3

Sequence:


               
               TGTTCCGCACACATCCTCTCACCGTCGTCACCCGCCCCCAGATCTCTTCGCCGAATCCCT
GCAGTGCAAGGTGGACTGTGAGACCAACTTGACCCCCAACGTGGGTGGCTACTTCGTGGA
GAAGTTCGTGGCCACCATGTACCACTACCTGCAGTTTGCCTACTGCAAGTGTGAGCTTCC
TGGTGGACTTGGGGTGGGGGAGAGCCCTGCACTGGAAGTAATGCTGAGTCGAGGGGCTCC
GTCCCTCATAATTGAAGATCCCGGGTGATGATAGGGAATATGGAATGCTGGGGGTGGAGG
GGCCGGTGAGGGGCTTGAGGGATGGAACATATAACAGTCTCATGGAATAATTCCAGGGCC
TCTTGAGTAAATGACTAAGCAGCCCACTGCACCTGCACCAGGCTTGGCAGTTTACAAAGC
TCGGCCATGTCTGTTTATCTCACTTGACCCTCTCACAAACCGCCAGTAGCAGACTCCTTA
TTGGACCCATTTTTCAGATGAGGGAGCTGAGGCTCATAGAGGCAAGGGGCCATCAGTCAC
ATGGCTAATAAAAAGTAGCACTGGGAGCTCCTTTTCGGTGGAGCAGGTTAACGATCCAGT
GTTGTCACTGCTGTGGCTTGGGTCACTGCTGTGCACAGGTTCAGTCATAGGCCTGGGAAC
TTCCACATGCTGAGGGTGTGACCAAAATAAAAACAAAAAAGTAGCACCAGAGTTTCCCAG
TGGTCTAGTGGTTAGGACTCAGCACATTCACTGCTGCTGTGGTCTGAGTTCAATTCCTGG
TCTGGGACCTGAGATCCCACATCAAGCCTCTGAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTCCGCACACATCCTCTCACCGTCGTCACCCGCCCCCAGATCTCTTCGCCGAATCCCT
GCAGTGCAAGGTGGACTGTGAGACCAACTTGACCCCCAACGTGGGTGGCTACTTCGTGGA
GAAGTTCGTGGCCACCATGTACCACTACCTGCAGTTTGCCTACTGCAAGTGTGAGCTTCC
TGGTGGACTTGGGGTGGGGGAGAGCCCTGCACTGGAAGTAATGCTGAGTCGAGGGGCTCC
GTCCCTCATAATTGAAGATCCCGGGTGATGATAGGGAATATGGAATGCTGGGGGTGGAGG
GGCCGGTGAGGGGCTTGAGGGATGGAACATATAACAGTCTCATGGAATAATTCCAGGGCC
TCTTGAGTAAATGACTAAGCAGCCCACTGCACCTGCACCAGGCTTGGCAGTTTACAAAGC
TCGGCCATGTCTGTTTATCTCACTTGACCCTCTCACAAACCGCCAGTAGCAGACTCCTTA
TTGGACCCATTTTTCAGATGAGGGAGCTGAGGCTCATAGAGGCAAGGGGCCATCAGTCAC
ATGGCTAATAAAAAGTAGCACTGGGAGCTCCTTTTCGGTGGAGCAGGTTAACGATCCAGT
GTTGTCACTGCTGTGGCTTGGGTCACTGCTGTGCACAGGTTCAGTCATAGGCCTGGGAAC
TTCCACATGCTGAGGGTGTGACCAAAATAAAAACAAAAAAGTAGCACCAGAGTTTCCCAG
TGGTCTAGTGGTTAGGACTCAGCACATTCACTGCTGCTGTGGTCTGAGTTCAATTCCTGG
TCTGGGACCTGAGATCCCACATCAAGCCTCTGAACA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               1-230, gnl|bosTau2|chr23 (153688-153924)
               

               
               1-230, gnl|Hg17|chr17 (37219657-37219389)
               

               
               1-230, gnl|Mm7|chr11 (100521910-100521631)
               


               
               288-565, gnl|bosTau2|chr23 (153939-154208)
               

               
               288-565, gnl|Hg17|chr17 (37219374-37218765)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-230, gnl|bosTau2|chr23 (153688-153924)
               

               
               1-230, gnl|Hg17|chr17 (37219657-37219389)
               

               
               1-230, gnl|Mm7|chr11 (100521910-100521631)
               


               
               288-565, gnl|bosTau2|chr23 (153939-154208)
               

               
               288-565, gnl|Hg17|chr17 (37219374-37218765)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sin (0.174948)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)

	1-230, gnl\|bosTau2\|chr23 (153688-153924)
	1-230, gnl\|Hg17\|chr17 (37219657-37219389)
	1-230, gnl\|Mm7\|chr11 (100521910-100521631)

	288-565, gnl\|bosTau2\|chr23 (153939-154208)
	288-565, gnl\|Hg17\|chr17 (37219374-37218765)