Ss1.1-Pig3-SRG8003C20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCCCGAGCCCAGCCGAGCCCAGCGCGTCCCGCGGACGACCCTGCCAAAGCTGTACAAA GATGTGCGACGACGAGGAGACCACCGCCCTGGTGTGCGACAACGGCTCCGGGCTGGTAAA GGCTGGCTTCGCAGGCGACGACGCTCCCCGCGCGGTCTTCCCTTCCATCGTAGGCCGCCC GCGCCACCAGGGGGTCATGGTGGGTATGGGTCAGAAGGATTCCTACGTGGGTGACGAGGC CCAGAGCAAGCGAGGTATTCTGACCCTCAAGTATCCCATTGAGCATGGCATCATCACCAA CTGGGATGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTCCGTGTAGCCCC CGAGGAGCACCCTACTCTGCTCACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAA GATGACCCAGATCATGTTTGAAACCTTCAATGTCCCTGCCATGTATGTGGCCATCCAGGC GGTGCTGTCCCTCTATGCTTCTGGCCGTACCACAGGCATTGTTCTAGACTCTGGGGATGG CGTAACCCACAACGTCCCCATTTACGAGGGCTATGCCTTGCCACATGCCATCATGCGTCT GGATCTGGCTGGTCGGGATCTCACTGACTACCTCATGAAGATCCTCACTGAGCGTGGCTA CTCCTTTGTCACCACTGCTGAGCGTGAAATTGTTCGTGACATTAAAGAGAAGCTGTGCTA TGTTGCCCTGGATTTTGAGAATGAGATGGCTACAGCTGCTTCTTCCTCCTCCTTGGAGAA GAGCTATGAACTGCCTGATGGCCAGGTCATCACTATTGGCAATGAGCGCTTCCGCTGCCC TGAGACGCTCTTCCAGCCCTCCTTCATTGGTATGGAATCTGCTGGCATCCATGAAACGAC TTACAACAGCATCATGAAATGTGACATTGATATTCGCAAGGACCTGTATGCTAACAATGT CTTATCTGGAGGTACCACCATGTACCCAGGTATTGCTGATCGCATGCAAAAGGAAATCAC TGCCCTGGCTCCCAGCACCATGAAGATCAAGATTATTGCTCCCCCTGAGCGTAAGTACTC TGTCTGGATTGGGGGCTCCATCCTGGCATCCTTGTCCACCTTCCAACAGATGTGGATTAG CAAGCAAGAGTATGATGAGGCAGGCCCATCCATCGTCCACCGCAAATGCTTCTAAGGTGC CTTGTCTCTTAGTCTACTTTACGTTCAGGATGACAGGTTAATGCTTCCAACCCACCCTTC TTTATCTCTTATCCATCATTGTACAGTTTGTTTACACACGTGCCATTTATTTGTGCTTCT AATATTTATTGCTTTATAAATAAACCAGACCAGGACTTGCAACCTCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCCCGAGCCCAGCCGAGCCCAGCGCGTCCCGCGGACGACCCTGCCAAAGCTGTACAAA GATGTGCGACGACGAGGAGACCACCGCCCTGGTGTGCGACAACGGCTCCGGGCTGGTAAA GGCTGGCTTCGCAGGCGACGACGCTCCCCGCGCGGTCTTCCCTTCCATCGTAGGCCGCCC GCGCCACCAGGGGGTCATGGTGGGTATGGGTCAGAAGGATTCCTACGTGGGTGACGAGGC CCAGAGCAAGCGAGGTATTCTGACCCTCAAGTATCCCATTGAGCATGGCATCATCACCAA CTGGGATGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTCCGTGTAGCCCC CGAGGAGCACCCTACTCTGCTCACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAA GATGACCCAGATCATGTTTGAAACCTTCAATGTCCCTGCCATGTATGTGGCCATCCAGGC GGTGCTGTCCCTCTATGCTTCTGGCCGTACCACAGGCATTGTTCTAGACTCTGGGGATGG CGTAACCCACAACGTCCCCATTTACGAGGGCTATGCCTTGCCACATGCCATCATGCGTCT GGATCTGGCTGGTCGGGATCTCACTGACTACCTCATGAAGATCCTCACTGAGCGTGGCTA CTCCTTTGTCACCACTGCTGAGCGTGAAATTGTTCGTGACATTAAAGAGAAGCTGTGCTA TGTTGCCCTGGATTTTGAGAATGAGATGGCTACAGCTGCTTCTTCCTCCTCCTTGGAGAA GAGCTATGAACTGCCTGATGGCCAGGTCATCACTATTGGCAATGAGCGCTTCCGCTGCCC TGAGACGCTCTTCCAGCCCTCCTTCATTGGTATGGAATCTGCTGGCATCCATGAAACGAC TTACAACAGCATCATGAAATGTGACATTGATATTCGCAAGGACCTGTATGCTAACAATGT CTTATCTGGAGGTACCACCATGTACCCAGGTATTGCTGATCGCATGCAAAAGGAAATCAC TGCCCTGGCTCCCAGCACCATGAAGATCAAGATTATTGCTCCCCCTGAGCGTAAGTACTC TGTCTGGATTGGGGGCTCCATCCTGGCATCCTTGTCCACCTTCCAACAGATGTGGATTAG CAAGCAAGAGTATGATGAGGCAGGCCCATCCATCGTCCACCGCAAATGCTTCTAAGGTGC CTTGTCTCTTAGTCTACTTTACGTTCAGGATGACAGGTTAATGCTTCCAACCCACCCTTC TTTATCTCTTATCCATCATTGTACAGTTTGTTTACACACGTGCCATTTATTTGTGCTTCT AATATTTATTGCTTTATAAATAAACCAGACCAGGACTTGCAACCTCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 189-308, + strand, RNAz p=0.712833 | |
| 663-782, + strand, RNAz p=0.97708 | |
| 743-871, - strand, RNAz p=0.818653 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 189-308, + strand, RNAz p=0.712833 | |
| 663-782, + strand, RNAz p=0.97708 | |
| 743-871, - strand, RNAz p=0.818653 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 189-516, gnl|bosTau2|chr10 (19086812-19086485) | |
| 189-516, gnl|canFam2|chr30 (5506751-5507104) | |
| 189-516, gnl|dasNov1|scaffold_19757 (44022-43669) | |
| 189-516, gnl|echTel1|scaffold_318944 (3386-3034) | |
| 189-516, gnl|fr1|chrUn (63305598-63305946) | |
| 189-516, gnl|galGal2|chr5 (29145784-29145442) | |
| 189-516, gnl|hg17|chr15 (32872717-32873069) | |
| 189-516, gnl|Hg17|chr15 (32873064-32872737) | |
| 189-516, gnl|loxAfr1|scaffold_10024 (29037-28725) | |
| 189-516, gnl|mm7|chr2 (113791108-113791460) | |
| 189-516, gnl|Mm7|chr2 (113791455-113791128) | |
| 189-516, gnl|monDom2|scaffold_12 (9572456-9572112) | |
| 189-516, gnl|oryCun1|scaffold_179293 (445-93) | |
| 189-516, gnl|panTro1|chr16 (32653340-32653692) | |
| 189-516, gnl|rheMac2|chr7 (13132136-13132488) | |
| 189-516, gnl|rn3|chr3 (99800397-99800748) | |
| 189-516, gnl|tetNig1|chr10 (7897220-7896871) | |
| 189-516, gnl|xenTro1|scaffold_199 (677786-677445) | |
| 663-871, gnl|bosTau2|chr10 (19085497-19085289) | |
| 663-871, gnl|canFam2|chr30 (5505628-5505833) | |
| 663-871, gnl|danRer3|chr14 (32886032-32885827) | |
| 663-871, gnl|dasNov1|scaffold_1043 (13637-13827) | |
| 663-871, gnl|echTel1|scaffold_318944 (4473-4268) | |
| 663-871, gnl|fr1|chrUn (63305079-63305280) | |
| 663-871, gnl|galGal2|chr5 (29146862-29146670) | |
| 663-871, gnl|hg17|chr15 (32871574-32871779) | |
| 663-871, gnl|Hg17|chr15 (32871789-32871581) | |
| 663-871, gnl|loxAfr1|scaffold_10024 (29791-29599) | |
| 663-871, gnl|mm7|chr2 (113790000-113790205) | |
| 663-871, gnl|Mm7|chr2 (113790215-113790007) | |
| 663-871, gnl|monDom2|scaffold_12 (9573880-9573675) | |
| 663-871, gnl|oryCun1|scaffold_214311 (43778-43970) | |
| 663-871, gnl|panTro1|chr16 (32652195-32652400) | |
| 663-871, gnl|rheMac2|chr7 (13130989-13131194) | |
| 663-871, gnl|rn3|chr3 (99799298-99799503) | |
| 663-871, gnl|tetNig1|chr10 (7897776-7897575) | |
| 663-871, gnl|xenTro1|scaffold_199 (679801-679596) | |
| 1050-1365, gnl|bosTau2|chr10 (19083781-19083455) | |
| 1050-1365, gnl|Hg17|chr15 (32870050-32869724) | |
| 1050-1365, gnl|Mm7|chr2 (113788451-113788128) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 189-516, gnl|bosTau2|chr10 (19086812-19086485) | |
| 189-516, gnl|canFam2|chr30 (5506751-5507104) | |
| 189-516, gnl|dasNov1|scaffold_19757 (44022-43669) | |
| 189-516, gnl|echTel1|scaffold_318944 (3386-3034) | |
| 189-516, gnl|fr1|chrUn (63305598-63305946) | |
| 189-516, gnl|galGal2|chr5 (29145784-29145442) | |
| 189-516, gnl|hg17|chr15 (32872717-32873069) | |
| 189-516, gnl|Hg17|chr15 (32873064-32872737) | |
| 189-516, gnl|loxAfr1|scaffold_10024 (29037-28725) | |
| 189-516, gnl|mm7|chr2 (113791108-113791460) | |
| 189-516, gnl|Mm7|chr2 (113791455-113791128) | |
| 189-516, gnl|monDom2|scaffold_12 (9572456-9572112) | |
| 189-516, gnl|oryCun1|scaffold_179293 (445-93) | |
| 189-516, gnl|panTro1|chr16 (32653340-32653692) | |
| 189-516, gnl|rheMac2|chr7 (13132136-13132488) | |
| 189-516, gnl|rn3|chr3 (99800397-99800748) | |
| 189-516, gnl|tetNig1|chr10 (7897220-7896871) | |
| 189-516, gnl|xenTro1|scaffold_199 (677786-677445) | |
| 663-871, gnl|bosTau2|chr10 (19085497-19085289) | |
| 663-871, gnl|canFam2|chr30 (5505628-5505833) | |
| 663-871, gnl|danRer3|chr14 (32886032-32885827) | |
| 663-871, gnl|dasNov1|scaffold_1043 (13637-13827) | |
| 663-871, gnl|echTel1|scaffold_318944 (4473-4268) | |
| 663-871, gnl|fr1|chrUn (63305079-63305280) | |
| 663-871, gnl|galGal2|chr5 (29146862-29146670) | |
| 663-871, gnl|hg17|chr15 (32871574-32871779) | |
| 663-871, gnl|Hg17|chr15 (32871789-32871581) | |
| 663-871, gnl|loxAfr1|scaffold_10024 (29791-29599) | |
| 663-871, gnl|mm7|chr2 (113790000-113790205) | |
| 663-871, gnl|Mm7|chr2 (113790215-113790007) | |
| 663-871, gnl|monDom2|scaffold_12 (9573880-9573675) | |
| 663-871, gnl|oryCun1|scaffold_214311 (43778-43970) | |
| 663-871, gnl|panTro1|chr16 (32652195-32652400) | |
| 663-871, gnl|rheMac2|chr7 (13130989-13131194) | |
| 663-871, gnl|rn3|chr3 (99799298-99799503) | |
| 663-871, gnl|tetNig1|chr10 (7897776-7897575) | |
| 663-871, gnl|xenTro1|scaffold_199 (679801-679596) | |
| 1050-1365, gnl|bosTau2|chr10 (19083781-19083455) | |
| 1050-1365, gnl|Hg17|chr15 (32870050-32869724) | |
| 1050-1365, gnl|Mm7|chr2 (113788451-113788128) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| hlv (14.6219) | |
| ese (6.45161) | |
| che (5.31625) | |
| nms (4.70488) | |
| hea (3.88548) | |
| eru (3.48139) | |
| eye (0.852515) | |
| ton (0.526501) | |
| ssp (0.406559) | |
| eje (0.296501) | |
| ste (0.270416) | |
| mas (0.210305) | |
| nep (0.183925) | |
| nco (0.161734) | |
| eli (0.151814) | |
| isp (0.150376) | |
| spl (0.143184) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| med (0.116252) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (14.6219) | |
| ese (6.45161) | |
| che (5.31625) | |
| nms (4.70488) | |
| hea (3.88548) | |
| eru (3.48139) | |
| eye (0.852515) | |
| ton (0.526501) | |
| ssp (0.406559) | |
| eje (0.296501) | |
| ste (0.270416) | |
| mas (0.210305) | |
| nep (0.183925) | |
| nco (0.161734) | |
| eli (0.151814) | |
| isp (0.150376) | |
| spl (0.143184) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| med (0.116252) |