Non-Coding RNA Search

Ss1.1-Pig3-SRG8003E13.3

Sequence:


               
               GTGTGCTGGTATAGTTGTGTTCGGGTATGAGTGTATTGTTGTAGCTGATTGTGTGTGTGT
TGTGCTTGGGGTTGTGCAGGCACTCGTGTGGGTTGTGTGTCCCTCTGTGTGAGTCTGTAT
GACCATGTGTCACCTTGGGTCTGGATATCTGTATCTGTTGCAGTCTGTGTGACATCTGAG
CATTTGTGTGTTTCTGAATGTCTGTGTGTCTTTGTGTCTCTTGGTGGCATGTTGTGTGTG
TTCATGTGTCTCTGTGTTGTATGTCTCTGCCACCCTAATGTTATATCCCACCTTTACTTC
TCAAGGCCAAGGACCCTAACAGCCCCTTCTAGAGGCTCAATTTCTCATCTGTAAAATGGA
ACACACAGGATGCCCTGCACAGTCAGAGGAGGGGTAGCAATGTCAACCATGCATACCCAG
GTCCTGGTCCCATGCTGTGTTCTCTCTTCCCTGGGTGTGGTAGTGGTGGTGTTCCCAGGC
CATTTGGGCTCCTTGGTCCCCCTGTCTGAGCTACTCTCATTTTTTAAAATTTTGCTGTGA
ATTCCACTCACATTTTTGAAGTTTGTTTTTGAATAACACAAGCCATTCAGGAACATCTCA
AAAGGATGCAGAAGTACCCAGAGTGAAAATCACCCTCACTCTGGTGGGACACCCCTCTCT
CCCCGCTCTAGAAGGGCCTTGTTTTTATCCAGCTTTGTCTGAACAAATGCATATGTATCC
TTATAAAGGGCATATGTATATTCTCTTTAAAAAAAAAAATCCCAAATGAGATCTTGAGAC
TGCTTGCTGAGTTTATAGCAGGGGTTCTCAACTGGGGTGGAGACACCCCAGGGGACACTG
GGTATTGTCCTGGGGGTGCTCTTGGCATCCAGTGCATAGGGGCAGGGAGGCTGCTCCACC
CCCCACAGAGCATGGTCCTTGGTGCCTGAGCGGAGAGGAGCCCTTGTCTGCATCTTGCTC
CCCCCATCCCAGCCCCCAGCTCTCAGAGGCATCTCCAGGTGGGAATCCCTTGTTCTTTTG
TGGAGCTGTGTAGTATTCCAGCCTGTGACTGTGCAGCGTTGCTGAATTGGTCCTCACAGG
TGGACACAGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTGCTGGTATAGTTGTGTTCGGGTATGAGTGTATTGTTGTAGCTGATTGTGTGTGTGT
TGTGCTTGGGGTTGTGCAGGCACTCGTGTGGGTTGTGTGTCCCTCTGTGTGAGTCTGTAT
GACCATGTGTCACCTTGGGTCTGGATATCTGTATCTGTTGCAGTCTGTGTGACATCTGAG
CATTTGTGTGTTTCTGAATGTCTGTGTGTCTTTGTGTCTCTTGGTGGCATGTTGTGTGTG
TTCATGTGTCTCTGTGTTGTATGTCTCTGCCACCCTAATGTTATATCCCACCTTTACTTC
TCAAGGCCAAGGACCCTAACAGCCCCTTCTAGAGGCTCAATTTCTCATCTGTAAAATGGA
ACACACAGGATGCCCTGCACAGTCAGAGGAGGGGTAGCAATGTCAACCATGCATACCCAG
GTCCTGGTCCCATGCTGTGTTCTCTCTTCCCTGGGTGTGGTAGTGGTGGTGTTCCCAGGC
CATTTGGGCTCCTTGGTCCCCCTGTCTGAGCTACTCTCATTTTTTAAAATTTTGCTGTGA
ATTCCACTCACATTTTTGAAGTTTGTTTTTGAATAACACAAGCCATTCAGGAACATCTCA
AAAGGATGCAGAAGTACCCAGAGTGAAAATCACCCTCACTCTGGTGGGACACCCCTCTCT
CCCCGCTCTAGAAGGGCCTTGTTTTTATCCAGCTTTGTCTGAACAAATGCATATGTATCC
TTATAAAGGGCATATGTATATTCTCTTTAAAAAAAAAAATCCCAAATGAGATCTTGAGAC
TGCTTGCTGAGTTTATAGCAGGGGTTCTCAACTGGGGTGGAGACACCCCAGGGGACACTG
GGTATTGTCCTGGGGGTGCTCTTGGCATCCAGTGCATAGGGGCAGGGAGGCTGCTCCACC
CCCCACAGAGCATGGTCCTTGGTGCCTGAGCGGAGAGGAGCCCTTGTCTGCATCTTGCTC
CCCCCATCCCAGCCCCCAGCTCTCAGAGGCATCTCCAGGTGGGAATCCCTTGTTCTTTTG
TGGAGCTGTGTAGTATTCCAGCCTGTGACTGTGCAGCGTTGCTGAATTGGTCCTCACAGG
TGGACACAGTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               724-871, - strand, RNAz p=0.994217

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               724-871, - strand, RNAz p=0.994217

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               9-392, gnl|bosTau2|chr7 (16184139-16184525)
               

               
               9-392, gnl|Hg17|chr19 (3313351-3313764)
               


               
               420-952, gnl|bosTau2|chr7 (16184529-16185087)
               

               
               420-952, gnl|Hg17|chr19 (3313768-3314920)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-392, gnl|bosTau2|chr7 (16184139-16184525)
               

               
               9-392, gnl|Hg17|chr19 (3313351-3313764)
               


               
               420-952, gnl|bosTau2|chr7 (16184529-16185087)
               

               
               420-952, gnl|Hg17|chr19 (3313768-3314920)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	9-392, gnl\|bosTau2\|chr7 (16184139-16184525)
	9-392, gnl\|Hg17\|chr19 (3313351-3313764)

	420-952, gnl\|bosTau2\|chr7 (16184529-16185087)
	420-952, gnl\|Hg17\|chr19 (3313768-3314920)